Scin001627.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- lov
- Assembly
- GCA_963854165.1
- Location
- OY974082.1:22192463-22204824[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-18 3.3e-15 55.3 0.0 1 44 622 665 622 666 0.96
Sequence Information
- Coding Sequence
- ATGACAACGGAAGAGGAACACTACAGCCTCAGGTGGAACAATCACCAAAATCACATACTGCGAGCATTCGACTCGCTGCTGCAGACAAAAACCCTCGTCGACGTCACACTGGTGTGTGCCGAGACAAGCATACGCGCCCACAAGGTCGTACTGTCCGCGTGCTCCCCATTCTTTCAGCGCGTCTTCTCCGAAACACCATGCAAACATCCTGTCATCGTGTTGAAGGACTTTCGCGGCTGGGTGGTGCAGGCCATCGTCGACTTTATGTATCGCGGCGAAATCAGCGTGCCACAGCAACGATTGCAAGCACTCATACAAGCGGGCGAATCACTGCAAGTGCGCGGTCTCGTCGATCATCCGGTGACAGGAAAAACACCAACACCCGCCGCCTCACCCGATGATTTTGCTATGATGGACACATCAATTGTGTCACCCGAATCACCGCCACAATCCTCGTTCGAGGATCATCCCGCAATGATGGGCGCAAAATTGATGTTACCCACACACCACATGTACATGAACAGTAGTGCCGCGTCTGTGGCGGGCGCCGAGCTCTGTACGTCACCGATGCCGCGTCGCAAGCAAGCGAGACCCCGCCGGAGATCGGGGGAATGTGGTCCACACGATTTGACGAGTAAATCACCGACCCCAAAGCGATCAACATCGCCGACGGATTGTGCGAGAACAACCGCAGACGGTGATGAGGTAATCCATCATGACGATGAGATGATGATGCACGAAGCTGATGACAAAGAGAATAAGCCTGAGCCAAATTTGATCGATGATGAGGATGCCGATGAGGATGATGAGGAATGCAAGGAGATTAAATCAGTGACAGCGAGAAAAGATAATGAGGATGAGGATGATGTTGGTGGCGGCGGTGATGGGGTCGGTGATGTCGATGAGGATGACGATGATGGGCATGATGAGGAGGATATTGAGGAGCGCGATGAAGAGGGTGAGGAGGGTGCGAGTGGCGAGGGACCTGAAGACTTATGTACCAAAAATAGCttgattaataataacaatagcGATAGTTtaagaaacaacaacaataacaacaacaacaacaccactAGCAGTagtaataacaacaacaacaatagcagcagcaacaacaataacaacaatcgAATAGTTTTATCATTGAAGGACATTCGACACTTAAATCGGCCACCAACGATGGGACGCAACGTCCCAATTCCACCACCACATTTAGCGGGTCCAAATGGTAGTGCAATTTCACCACTGGATtttcaccatcatcatcaacaacaacaacaacagcaacaacaacaccagcaACACATGcagcaacaacaccaacatCATCAGAACAGCAGCAAAGACCATCACGCCCTCATGCAGTCCGCAGCTGAGCACATGAAGCGCGAGGCCATGGAAAATCATGCCCGCATGGAGACGAGTAGTCCCAATTTTTTAGAACAAATGGATTTGTCGATGCCGCACCACATGCATCATCCACACCATCCGCATCATCCACACATGCCGAGTCTGCATGATTTGGAGAATCGTGGAATGCACAAGGATTTTCCCAGTTCGCCGATGAGTCTGCCGTCACATTTTAATCCACCGGATGGGCCGCCACATCCGCCGTCACCATTGCCCTTTCCTGGTATGTCATCAGCGTTAACGCTGACACCTCCTCATATGTTTGGATTAGATTCTCCATTGGGGCTGTTTCCACCAGGTATGGATCCAGGCAAATTGTACAATCCGTTGATGGATATGTCGGATCCGCGTGGAATGCATTCGGAGCATCATTCGCCGTACATGAAGAAAAAAATGTCACGTCCCAAAGGCCAACACTCCGCACCACGTGGTGGCCCACCCCGCTCCTGGACAAACGCCGAGCTCACCGAAGCCCTACAACATGTgtggaacaaaaaaatgacCACAAGTCAAGCCTCACGCATATTCGGCATACCCTACAACTCCCTGCTGATGTATGTCCGCGGTAAATACGGCAAAAGTTTGAAGCTGGAGCAATTACGCAAAGACTGCATCAGTGGTCCACCCATTGAGTTGCTGACCATGGGTTTGGCCGCCAGCAAGGCGCACCTCAGTGAGAGCCGCAaaaacagcagcaacaacgaCATGAAAGACATGGATGGTGGGCCACAAATGCAACGCAGCTCATCGTCGGAGCCCGACCTAATGTCGAGTCCCAACCCCATGTTCAATCCGTTTCCGCACGGTTTCTATCCGGATTTTCCAGGTGGTTTCCCCGGTCTGCCGCTCAGTATGTTGAGTTTAATGCCGCCGGAACGGCATCCGCCGCCAATGCATTTGAACAGCAGTCTCGACGAGGATTGCAAGAGTGATCGGTCGAAGCAGTCGCTGGAGGATGAGTTCACGCAACCGTTGGCGTTGAATCGCGAGGAGCGGCGCGAGCTGATGCAACAGAATGGTGGCGGCGGCGGTGGGGGGCAGGATTGA
- Protein Sequence
- MTTEEEHYSLRWNNHQNHILRAFDSLLQTKTLVDVTLVCAETSIRAHKVVLSACSPFFQRVFSETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQQRLQALIQAGESLQVRGLVDHPVTGKTPTPAASPDDFAMMDTSIVSPESPPQSSFEDHPAMMGAKLMLPTHHMYMNSSAASVAGAELCTSPMPRRKQARPRRRSGECGPHDLTSKSPTPKRSTSPTDCARTTADGDEVIHHDDEMMMHEADDKENKPEPNLIDDEDADEDDEECKEIKSVTARKDNEDEDDVGGGGDGVGDVDEDDDDGHDEEDIEERDEEGEEGASGEGPEDLCTKNSLINNNNSDSLRNNNNNNNNNTTSSSNNNNNNSSSNNNNNNRIVLSLKDIRHLNRPPTMGRNVPIPPPHLAGPNGSAISPLDFHHHHQQQQQQQQQHQQHMQQQHQHHQNSSKDHHALMQSAAEHMKREAMENHARMETSSPNFLEQMDLSMPHHMHHPHHPHHPHMPSLHDLENRGMHKDFPSSPMSLPSHFNPPDGPPHPPSPLPFPGMSSALTLTPPHMFGLDSPLGLFPPGMDPGKLYNPLMDMSDPRGMHSEHHSPYMKKKMSRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPIELLTMGLAASKAHLSESRKNSSNNDMKDMDGGPQMQRSSSSEPDLMSSPNPMFNPFPHGFYPDFPGGFPGLPLSMLSLMPPERHPPPMHLNSSLDEDCKSDRSKQSLEDEFTQPLALNREERRELMQQNGGGGGGGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382199; iTF_01382839; iTF_01383029;
- 90% Identity
- iTF_01382199;
- 80% Identity
- iTF_01382199;