Scin003961.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- bab2
- Assembly
- GCA_963854165.1
- Location
- OY974082.1:50779479-50809587[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.3 8.8e+03 -3.7 0.0 22 30 274 282 271 283 0.86 2 5 1.3e-11 2.3e-08 33.4 0.0 2 39 557 595 556 599 0.89 3 5 1.7e-13 2.9e-10 39.4 0.1 2 39 611 648 610 651 0.94 4 5 4.4e-18 7.4e-15 54.2 0.0 1 45 665 710 665 710 0.98 5 5 3.1e-19 5.3e-16 57.8 0.0 1 42 717 759 717 761 0.96
Sequence Information
- Coding Sequence
- ATGGCAACCACAGATGCCCACCAATATTTCAGCCTGCGCTGGAATAACTACCAAAGCAACATGACGTCAGTCTTTCATCAGCTCCTGGAGGCACAATCATTCGTCGATGTAACACTTGCATGCGAACATAATACATTAAGAGCACACAAGGTTGTTCTATCCGCATGTTCAGCATATTTTAAGAAACTTCTGTTGGACAATCCATGTAAGCATCCAACGATAATCCTCCCGGCGGAGATCAACTTTAATGATCTTCAATCAATCATTGAATTTGTCTATCGCGGTGAAATCGATGTATCTGAAGCGGAATTACagGGTCTCTTGCGAACAGCcgaacaattaaaaatcaaaggCCTTTGCGAGGTCTCCGAAGTGTCATCCACCTCATCGCTAATCACACAATCAGCACCACCAACGGGCCAACCAACCGGTGGCAGTACAATCACAGCAGGTGACATCATTGGACCAACAGTGTACCACCAATCCACGGtgcaaaatattgcacaacagGATCAACCACCACCAAGTAAACGAAGTCGTCAGCGCCTCATTAAGTCACCGGAGAAAAATTCCACTCAACcgcaacaacaaattaatcaaacaTCAAAAGTTGACACGGCTGAGAGTACTTGCGTCGTTGCCACATCCACAACGGCTGCAACTGTGTGCAGCACGGCAATCGCATCCGCACTGATTGCTACCGTCAAACAGGAATGTCAACAACAGTTACATAACAGCAGTAGTAATAATAACAGCAACGGTAGCAGTGGTAGCGGTAACAGAGAGAACAATCAAATTCAACTGCATAGCAGCAATGGTGCAGCCACAAATTACAGTGTcagcaacaataacaacaattcaacGTCCTGTAGTGGCAATCCTGTAGTGGTACTGGAGCAGCGGGTTGTGACACGCGAAACAAAAGACAAAACGATGACTAGTCTGGGTATGGGAATGAATGGTAGCATCATGGGGGTGTCAATGGGCTTTCTGGACTTTGCGCCAGAACCACCAGCCCCATCAGCTACGCCAGTGACAGAGCACATTGATCTGAATTGTCCGCCGAGCAATGACACGCGTGATCTTTCCAATCCGACGGACGCGCTTGATATTGACAATCATATGACACAGCATTCCACCACGTTACATCATTTAAATCACcatcatcaccaccaccaccattctcatccccaacaacaacaacagcaacagcagcagcagcagcaacaacagcagcagcaatcACACTCCCAAGATTCATACGTACACTCGCATCAGTCGAGCGTTAACGGTGGTATTGTTGGGGGCTCAACCATTGAATTGAAATCACCGTCAGGATGTGGATCTTCGTCGTCAGCCTCTTCCTCTGTTGGAGGTGGTAGTGTTGGTGGCAATGGTGgaaatggtggtggtggtggtggatcACGTCAAAATATAACTGCCATGGAGATCGATCCGATTAATATCAAGCATGAGCATACGCAGGGCATGATTATTACACCGGAAATCGTAACGATGATGACATCCGGCCAAATGGAAATGTACAGTTCCGACACATCAGAAGACACAAAAATGAACCTGAGTGCTTCGCCCAGTCCCGGCATACAATACACGAATCTGTCCAATCACCAGGAGTCCAAAGGACAGGGTGGTCCCAAAACGTGGACCCAAGAGGTTATGGAGGCGGCATTAGATGCCCTCCGTAATCACAACATGAGTCTGACCAAGGCGTCTGTCACATTTGGTATACCATCGACGACGCTGTGGCAACGTGCCCACCGGCTCGGCATTGATACGCCGAAAAAGGAGGGCACCTCAAAAACATGGAACGAAGACTCATTGAATAACGCTTTGGAGGCGTTACGCAATGGACATATATCGGCGAACAAGGCTTCCAAGGCGTACGGTATACCATCGTCGACGCTGTACAAAATTGCGAGACGCGAGGGTATTCGATTGGCGGCGCCATTTAATGCGGCGCCCACTACGTGGACGCCAGAGGATTTGGAGCGTGCGTTGGAGGCGATACGAGCGGGTCACACGTCTGTGCAGAAGGCTAGCACTGAATTCGGAATTCCGACggGAACCCTTTATGGTCGCTGCAAACGAGAGGGCATTGAATTGTCAAGATCAAATCCAACACCCTGGTCTGAAGATGCTATGCTAGAAGCGCTTGATGCAGTGAGggTTGGACAAATGTCTATCAATCAGGCTGCTATTCATTTCAACCTGCCCTACAGCTCACTGTATGGCCGGTTTAAACGTGGCAAATATGAGATTAGTGGAGGTGCGGGCAATGACAGCATGAACAACTCACTTCATGATCAGAGTCCAGATAATTCGCAACATCACTATCAGTATGGCAGCCCGTCGATGCATTTGCAACCGCAACAACATCAAATAATGGTGGGATCACCGCCACCGCCACACTCACTCTCTGTAACCGGCCAGGCTGCACCCGGCAGCGTGGTGCAGCAAATTTACGAGCGCAGTTGA
- Protein Sequence
- MATTDAHQYFSLRWNNYQSNMTSVFHQLLEAQSFVDVTLACEHNTLRAHKVVLSACSAYFKKLLLDNPCKHPTIILPAEINFNDLQSIIEFVYRGEIDVSEAELQGLLRTAEQLKIKGLCEVSEVSSTSSLITQSAPPTGQPTGGSTITAGDIIGPTVYHQSTVQNIAQQDQPPPSKRSRQRLIKSPEKNSTQPQQQINQTSKVDTAESTCVVATSTTAATVCSTAIASALIATVKQECQQQLHNSSSNNNSNGSSGSGNRENNQIQLHSSNGAATNYSVSNNNNNSTSCSGNPVVVLEQRVVTRETKDKTMTSLGMGMNGSIMGVSMGFLDFAPEPPAPSATPVTEHIDLNCPPSNDTRDLSNPTDALDIDNHMTQHSTTLHHLNHHHHHHHHSHPQQQQQQQQQQQQQQQQQSHSQDSYVHSHQSSVNGGIVGGSTIELKSPSGCGSSSSASSSVGGGSVGGNGGNGGGGGGSRQNITAMEIDPINIKHEHTQGMIITPEIVTMMTSGQMEMYSSDTSEDTKMNLSASPSPGIQYTNLSNHQESKGQGGPKTWTQEVMEAALDALRNHNMSLTKASVTFGIPSTTLWQRAHRLGIDTPKKEGTSKTWNEDSLNNALEALRNGHISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMLEALDAVRVGQMSINQAAIHFNLPYSSLYGRFKRGKYEISGGAGNDSMNNSLHDQSPDNSQHHYQYGSPSMHLQPQQHQIMVGSPPPPHSLSVTGQAAPGSVVQQIYERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382192;
- 90% Identity
- iTF_01382192;
- 80% Identity
- iTF_01382192;