Basic Information

Insect: Sycophila texana
Gene Symbol: GLIS3
Assembly: GCA_035582955.1
Location: JAWWEN010000048.1:17576393-17580330[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0085 0.98 10.8 0.1 1 23 266 291 266 291 0.94

2 5 0.57 66 5.1 0.2 8 23 337 352 326 352 0.83

3 5 1.5e-06 0.00017 22.7 0.6 2 23 359 382 358 382 0.97

4 5 0.0001 0.012 16.8 2.4 1 23 388 412 388 412 0.96

5 5 6.7e-06 0.00078 20.6 0.2 1 23 418 442 418 442 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0085	0.98	10.8	0.1	1	23	266	291	266	291	0.94
2	5	0.57	66	5.1	0.2	8	23	337	352	326	352	0.83
3	5	1.5e-06	0.00017	22.7	0.6	2	23	359	382	358	382	0.97
4	5	0.0001	0.012	16.8	2.4	1	23	388	412	388	412	0.96
5	5	6.7e-06	0.00078	20.6	0.2	1	23	418	442	418	442	0.95

Sequence Information

Coding Sequence: ATGCACTTGGACGAGGAACTGCGCAGGGTCCTGGACGGCGCGTACCAGgagccgcagcagcagcagcaacagcagcagcagcagcaaccgCAGCATCAGCAGCAATGTTGGAGCGGCTGGGAGGAAGCTTACGGCTGGCCGGACGAGCCGAGGCAGCTCGGGCAGAGATTGCCTCCCGTCAACGCAGCCTTTTCCTTCTCCCGAAACTTTGGCTCAGTGGCAACGCAGCCCACCTACAGTCAATACAGCCAATATCAAATCCAACCAGACTGCCAGAGCCAGTATCGCGATGATCTCCTTTGCTTCCCGCCCATGCACGCTTTGCAACAGACTCAACTTCATATCGAGCAAAGCCTGCAAGCTGTCGACGACTTCGATCTCAGCCTCATAAGAGGTGACCCGACGACGCTCTCGCACAGCGACGAGTACGATAATCAGTTCGTCGATCAGTATGGCGATTCGACGAGCGCCGAGACCGGCGTAGATTACCAAATGGGCTCGGTAGTTCCGCAACTGGGCGAGCCCGGTGAAAAGGGCCCGTTTGCCGTCGGTCACTTGGTCTCCGCACACGCCGGTCAGAGCGAACCCATTGCCTTCGGAGCCGCCACCGACTTGCTCGAGTCCGTCAAGAGCGAACTGATTCCCGACAATCAGGTAGTTCTGCCCAGAGATGACAGTATGCTTCTTGCGGCTGAAGATCAACTGATCTTCGATAGCGAGAGCAAGGCGATCGAACGCGAACAGCAAGATGAGTCGTACGGAAGCGGACAGTCGGACGACGGATCGGCAACTCCGTATCCGTGCCTGTGGCTGGACTGCGGATGCGCGTTCGCCGAGCAGACCGGCTTAGTGCAGCACATCGAAAGGCGGCACATCGAGTCGTCCTCGTCGAGCGGTCACGGGGGCCGGCGGTTGCACcgagagcgcgagcgagaaacGCGCAAAGATTCGCAAGAGGGCCAGGAGGACGCGCAGTTCGCCTGCCTTTGGAAGGGCTGCTCGCGCGAACGGCCCTTCAACGCTCGCTACAAGCTTCTCATTCACATGCGAGTACACAGCGGAGAAAAACCGAACAAGTGCCCCTTCGCCGGCTGTAAGAAGGCTTTCTCGCGCctggaaaatttgaaaatccaTCAGCGCTCGCACACGGGTGAGCGGCCGTACGCCTGCCAGCATCGAGGCTGCACCAAAGCCTTCAGTAACAGCAGCGACCGTGCCAAACACCAAAGAACTCATTACGATAcgAAACCGTACGCATGCCAAGTAGCCGGGTGCGGCAAACGATACACGGATCCGTCATCGCTGCGCAAACACGCCAAGAACCACGCGGAGCTGGCCGGATTCGAGACGCGACTAGGCTGTAAACCTGCCAGGCGCTGCTCGAGCACCTCGAGCCTTTCCTCGGTGTCGGTGAATTACACAAACGGTCAATCCCGATCATCCGCGGGCATACCGGTCGCATCCATCCGTCACCACTCGCTCTCCTCGGACTATGGATCGCAGAAGGATCCCACAGAATTACTGGACGAATTCGAACTGAAGCCTTACCCCGCCACCGTATCTCCGCAGCTCGCCCACGTGCCGAACATCGATGATGGACACGAATACATACCGTACGAGAACGTGGCGAGGTTCTTGGGTGACGAGCGCAGCCAATTTGGATTTGACGGTTACGGCGCTGACGAGGACATTTGCGACCTGCAAGACTTGGGCTCTGACATCGAACAACAGTTCCTAGAGTTGGGAAGCCTTGACGACTCCGTTTTCATCGGCGAGTAA
Protein Sequence: MHLDEELRRVLDGAYQEPQQQQQQQQQQQPQHQQQCWSGWEEAYGWPDEPRQLGQRLPPVNAAFSFSRNFGSVATQPTYSQYSQYQIQPDCQSQYRDDLLCFPPMHALQQTQLHIEQSLQAVDDFDLSLIRGDPTTLSHSDEYDNQFVDQYGDSTSAETGVDYQMGSVVPQLGEPGEKGPFAVGHLVSAHAGQSEPIAFGAATDLLESVKSELIPDNQVVLPRDDSMLLAAEDQLIFDSESKAIEREQQDESYGSGQSDDGSATPYPCLWLDCGCAFAEQTGLVQHIERRHIESSSSSGHGGRRLHRERERETRKDSQEGQEDAQFACLWKGCSRERPFNARYKLLIHMRVHSGEKPNKCPFAGCKKAFSRLENLKIHQRSHTGERPYACQHRGCTKAFSNSSDRAKHQRTHYDTKPYACQVAGCGKRYTDPSSLRKHAKNHAELAGFETRLGCKPARRCSSTSSLSSVSVNYTNGQSRSSAGIPVASIRHHSLSSDYGSQKDPTELLDEFELKPYPATVSPQLAHVPNIDDGHEYIPYENVARFLGDERSQFGFDGYGADEDICDLQDLGSDIEQQFLELGSLDDSVFIGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01380861;
90% Identity: iTF_01380861;
80% Identity: -