Stex006650.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010000038.1:23662534-23665880[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.39 45 5.6 1.8 2 23 397 420 396 420 0.95 2 9 0.033 3.8 9.0 0.4 1 23 426 450 426 450 0.98 3 9 0.011 1.3 10.4 0.4 1 23 456 480 456 480 0.96 4 9 0.0031 0.36 12.2 0.2 3 23 488 510 486 510 0.92 5 9 0.00096 0.11 13.8 2.4 1 21 517 539 517 541 0.94 6 9 0.00033 0.039 15.2 2.9 3 23 550 572 549 572 0.91 7 9 5.3e-05 0.0062 17.7 0.7 1 23 578 602 578 602 0.96 8 9 0.00064 0.074 14.3 3.2 1 23 608 632 608 632 0.97 9 9 3.9e-05 0.0045 18.2 3.9 1 23 639 661 639 661 0.99
Sequence Information
- Coding Sequence
- ATGTCAACGTTGGCTCAGCAGGCGCCGCAAGTGCGGCGAGTTCGTCGGCGCCGCACGCCTCGCGGCCTCGGCTCCAGAAACGTGCTCTCGCCTGTCAAAGAGGCCGCGAGCGGCGGCGAGTGCTCCGACGCTGCTGACCACGAGGCCGCCGATCAGGCCTCGCTGTCTACGCAAAAGGACGCGTCCTGGACGCAAAGCGAGAAGgtgCTGCAGCAACAATTAAATACCTATAGTCTCATAACAGtcgaagaaattgaaaaatgtttgagaAATGCAAATGAATCCGCCGAAAACATTGGACTTAAAGGTAACTCACAAGTTAATATGGAAAGGTACTTAAATGAACAATTATCAGAAGTATTATTTGGAAGAGACATTTTGATAGAGGATATAGATATAGATTCAACAGCTAAAAGAATAAGCAATGGTTACGATAATATGTACAACGATTCACACAATCTATATTTCAGTAAGGAAGATGAGTATGTATTAACGGAATTTCAATTGGAAAATTTGGATCAAATGGATTATTGCACAGATGGAATAAATTTAGCAGAAGATTTCTCATCAATAAATGGTAATCTATTACCTTGTAATATTTCGAATGTCAATACTAAAGACTTGATTATAAGGCTGCAAGAAACTATTAATAagttaaatgataataataaaaatatagagaaTGTCCAAGTACAAAATCAAAGTTGCATTAGCGAAAGTTTTGATAATTCTTCACTTACAAGTTTGCAAGACTTAACTTTAGAAAATACTTCTTACAAcgaattaaatataagtaatcTGAATGACTGtacaaattgtaaaaattcagaattgcAATCTTCTCCACAAACTCAACCGATAAACTACACAGTCAAGAAATGTGCTGCAAATACAAAGAATGTTAATTCTACTATCAAATCAAAGTGTCAGTCAAGTATAATAACGAGAAGAAGAGCATTAATGAATAGAGAGCAGAATATCAGTAAGGACAAAGAAAGTAcaatagaaaaaacaaaaaaaaattcaatttctgaatcccaagaaaatgaagaagatgAAAACTTTTCACCTAGACCGTATTCCAATTTAAATCATCAAGAAATAGCAATTGCTAAGGCGTTATTTGAAATtggaataaaagaaagcatgctcaaatatatttatacacctgataaaatcaaaatatggGTTTGCCATATAGAAGACTGTGAAAGTCAATTTCCAAAATTGTACTGCCTCAAAACTCATTTATTACAGCATTATGGTATAAAACCATTcaagtgtgaTTATGAAGGCTGCTCATGGGCGTTTTATGGAGACGTTAAATTGAAACGTCATAAAGAGACtcacttaaagaaaaaaaattttgtatgtacaATACCTGGCTGCAAGCGCGGATTTACGACGATCTACAATCAAATTAACCACGAGAAGAGGCACTCACGCCCATACAGATTGGCTTGTCAAATACCAGACTGTAcagaaaaattccaaaaaaaacgTGATCTAGAGTTGCACATGATGTCACACAAGGAGAGTGATCCACAATATATTTGCAGTTTTGATGGCTGCGGCAAACGCTTCTACTCTAATAACACGCTCATGGCGCATCAACGCTGCCACAGTCACTCAGATAAAGAGATGGCCTGTTCTTGGCCAGGCTGTGGTAAGACCTTTAATCATCCCTGTCGACTGAAGACGCATATGCGTTTCCATACTGGTAATAAGCCTTATGCCTGCACTTTTAAAGGCTGCAAGTGGGCTTTTCCTACTGCAAGTAAGCTTAAACGGCACCAGTTGAAGCATACCAATGAAAGAAAGTTTGTATGTGACTTTGAAAACTGCAAGAAAACTTTTATGCGCTTAGATCACCTGAAGGATCACAAGCTCACGCATGATGATAAAAAACGGGTTTTCCAGTGTCACTTTTgttcttcttccttttcgaCTAAAAGTGCTCTTTATGCACACATAAAAAGGCATGGAAAAGAGTCACATGTACGTCGCAAAGCTATGGATACAACGGCTGAGAAAAAGAAGATCGCTCGCCAGAAGAAGGAATTTGTATGTTCCACTATACAACCCCTTCGAATGACAATTAAGAGAGTATGTAAAAAATCGAAAGCCGATAAAGTAGAAACCGAGAAGGCAGTAGCTGTTCAAAGCACCAGAAGAAAATCAaggagaataaagaaaaaatctcaaaattcTGAGAATAAAGATGAAGATTCGAGTAATATACTTGTCCGCCCTACTCTCATTCAATCGGATCTTCAAAAGGAGCAGAATCCAGCTCTTACCGAGATACAGAACGTGACGCGCTTAATCCCATCTAGTCTGATCTCTCAACAAGAGCTCGTCACCACACATACACTTCAGAACTTGGCGAGCAATCAGGCTGTCCCGATGCTGAACCAAGCGGACTCTGTTGCTCTCGAGAACGAAACTTTAAATCTTGAGCTTCAACTCCCTTCGGAAGAACTGGAGGATAATGCAGGTAATGAAGGTTCGGCGAGGACTGCATACACTCGATACGACGTCTTAAGCTTAAAACCAAATAGAGGAGGTTTAAACTCAACTGTAAAGGAGAGCGACATCGTTTTAGATGTAGCTAACATTGAGGACGGATTTATGCTGTCCGAGGACCTCGTGCCATTTGCCTGCTGTCAGGATGACACCAGCGTCCCAGCCTACCAAATACTGCTGCTCAATACTGAAACTGCAGAGAACGAAATCAGAATCCAAGATTTGGATTAG
- Protein Sequence
- MSTLAQQAPQVRRVRRRRTPRGLGSRNVLSPVKEAASGGECSDAADHEAADQASLSTQKDASWTQSEKVLQQQLNTYSLITVEEIEKCLRNANESAENIGLKGNSQVNMERYLNEQLSEVLFGRDILIEDIDIDSTAKRISNGYDNMYNDSHNLYFSKEDEYVLTEFQLENLDQMDYCTDGINLAEDFSSINGNLLPCNISNVNTKDLIIRLQETINKLNDNNKNIENVQVQNQSCISESFDNSSLTSLQDLTLENTSYNELNISNLNDCTNCKNSELQSSPQTQPINYTVKKCAANTKNVNSTIKSKCQSSIITRRRALMNREQNISKDKESTIEKTKKNSISESQENEEDENFSPRPYSNLNHQEIAIAKALFEIGIKESMLKYIYTPDKIKIWVCHIEDCESQFPKLYCLKTHLLQHYGIKPFKCDYEGCSWAFYGDVKLKRHKETHLKKKNFVCTIPGCKRGFTTIYNQINHEKRHSRPYRLACQIPDCTEKFQKKRDLELHMMSHKESDPQYICSFDGCGKRFYSNNTLMAHQRCHSHSDKEMACSWPGCGKTFNHPCRLKTHMRFHTGNKPYACTFKGCKWAFPTASKLKRHQLKHTNERKFVCDFENCKKTFMRLDHLKDHKLTHDDKKRVFQCHFCSSSFSTKSALYAHIKRHGKESHVRRKAMDTTAEKKKIARQKKEFVCSTIQPLRMTIKRVCKKSKADKVETEKAVAVQSTRRKSRRIKKKSQNSENKDEDSSNILVRPTLIQSDLQKEQNPALTEIQNVTRLIPSSLISQQELVTTHTLQNLASNQAVPMLNQADSVALENETLNLELQLPSEELEDNAGNEGSARTAYTRYDVLSLKPNRGGLNSTVKESDIVLDVANIEDGFMLSEDLVPFACCQDDTSVPAYQILLLNTETAENEIRIQDLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01380849;
- 90% Identity
- iTF_01380849;
- 80% Identity
- -