Stex030359.2
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010054336.1:1626-7339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.22 25 6.4 0.1 3 21 42 60 41 61 0.91 2 9 0.00082 0.094 14.0 5.8 1 23 69 92 69 92 0.97 3 9 0.00044 0.051 14.9 0.2 3 20 103 120 101 122 0.94 4 9 0.052 6 8.3 0.0 3 20 132 149 130 150 0.95 5 9 3.7e-05 0.0043 18.2 3.2 1 21 187 207 187 208 0.96 6 9 1.2 1.4e+02 4.1 0.1 3 13 219 229 217 233 0.88 7 9 8.5e-06 0.00098 20.3 1.5 1 21 268 288 268 289 0.95 8 9 4.8e-05 0.0055 17.9 1.2 1 21 333 353 333 354 0.96 9 9 0.00076 0.088 14.1 3.3 3 23 364 385 362 385 0.97
Sequence Information
- Coding Sequence
- ATGAGAGATAAGAAGCGAAAGAAAGAAAAAGCAGCTCAGCAACTAACAAAAGACTCTGGTTTTCTGTTTGTGCTTGCAGTTCCGCTGCTGATTCCCAATTCGAATATTCAGATGGAACAGGCCTGTCCGCGCTGCGGCAAAATTTACCTTCGCCAACGCAGACTATGGCTGCATCTGCAGAACGAGTGCGGAAGCCACGTTCAGTACAGCTGTCACTACTGCGAATTTCACAGCAAGAAAAAGAGCAATCTGCAGGCGCACGTGCAGCGCATGCATTACAACGAGAAACCGAAAGgtcGCTACGGTTGCGAGAGGTGTGGTAAGAGTTATATGAACAAGGGATCCTTGTCGAGGCATTTGTCCTATGAGTGCGGCGTAGAGCCCGGATTCGGGTGTCCTTACTGCGAATACCGCTCGAAACGCGCCTCCGGCGTACGAGAACACATAGCCTGCAAGCATCGAGggaTGTGCGATTTGCCTTGGCTGCCGGAAAAAATTGTGCAGGTCCGGCAGAACAGGAGGTATCCGAAAACCCTCTCCCAAAATTTGACTGGACGATTCGAATGCAACGAGTGTCACAAGAGTTACAAGTACAGCGGCGACTTGCACCGGCATAAAAGGTTAGAATGCAAGGGTTGTAAGCCTGGCTTTGGCTGTCCTTATTGCGACTATCGCGTCAAGCAGAAGTGGATGCGTCGAGATTTGCCACGACTGAAGCCGAAGAGAGTTGTGCGCCTTAATTCGGAAGAGTGGACCCTGGTGGAAAAACGGAGAAGAAATTGCAAAAGTTCGATTGGACGATACGTGTGCGACAAGTGCGGCAAAAGTTACAAGCACAAGCCGTATTTGAACTGGCATCGAAATAAAGAATGTGGTTTTGAGCCGACTGTTAACTtactACTTGATTTCCCTTGGATGAAGTTGAATGACGTCATGAAGACGCAGCCTGAAGTGGAACAAGTTGGTTTGGCAGACTTGCAAAACTTTGAAGCTCGCTACGAATGTGACAATTGTAAAAAgacttacaaaattaaatacgaTCTGGTGCGACATCAACGATACGAGTGCGGTCGTAAGCCCGGCTTTGGATGTCCTTACTGCAACTACACCTGCAAACGAAAATACAATGCGAGTAGACACGTCAGTACAAAACACCCGACGAAAAAGCTGCGCATTCTCAATTTGGAATCTTTGATCTGA
- Protein Sequence
- MRDKKRKKEKAAQQLTKDSGFLFVLAVPLLIPNSNIQMEQACPRCGKIYLRQRRLWLHLQNECGSHVQYSCHYCEFHSKKKSNLQAHVQRMHYNEKPKGRYGCERCGKSYMNKGSLSRHLSYECGVEPGFGCPYCEYRSKRASGVREHIACKHRGMCDLPWLPEKIVQVRQNRRYPKTLSQNLTGRFECNECHKSYKYSGDLHRHKRLECKGCKPGFGCPYCDYRVKQKWMRRDLPRLKPKRVVRLNSEEWTLVEKRRRNCKSSIGRYVCDKCGKSYKHKPYLNWHRNKECGFEPTVNLLLDFPWMKLNDVMKTQPEVEQVGLADLQNFEARYECDNCKKTYKIKYDLVRHQRYECGRKPGFGCPYCNYTCKRKYNASRHVSTKHPTKKLRILNLESLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01380844;
- 90% Identity
- -
- 80% Identity
- -