Basic Information

Insect: Sycophila texana
Gene Symbol: -
Assembly: GCA_035582955.1
Location: JAWWEN010000020.1:15574742-15578332[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0079 0.91 10.9 0.2 1 20 117 136 117 137 0.96

2 12 0.013 1.5 10.3 4.6 2 23 282 304 282 304 0.91

3 12 1.4e-05 0.0016 19.5 0.8 2 23 367 389 366 389 0.95

4 12 0.003 0.35 12.2 1.3 1 23 543 566 543 566 0.96

5 12 0.0009 0.1 13.9 0.0 3 23 616 637 615 637 0.93

6 12 0.26 30 6.1 0.1 3 23 668 689 667 689 0.93

7 12 0.01 1.2 10.6 3.7 2 23 731 753 730 753 0.96

8 12 0.035 4.1 8.9 2.7 3 23 768 789 766 789 0.94

9 12 2e-05 0.0023 19.1 0.2 2 23 834 856 834 856 0.94

10 12 7 8e+02 1.6 1.8 1 23 939 963 939 963 0.95

11 12 5.6e-05 0.0064 17.7 0.0 2 23 979 1001 978 1001 0.96

12 12 0.014 1.6 10.1 0.5 1 23 1073 1096 1073 1096 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0079	0.91	10.9	0.2	1	20	117	136	117	137	0.96
2	12	0.013	1.5	10.3	4.6	2	23	282	304	282	304	0.91
3	12	1.4e-05	0.0016	19.5	0.8	2	23	367	389	366	389	0.95
4	12	0.003	0.35	12.2	1.3	1	23	543	566	543	566	0.96
5	12	0.0009	0.1	13.9	0.0	3	23	616	637	615	637	0.93
6	12	0.26	30	6.1	0.1	3	23	668	689	667	689	0.93
7	12	0.01	1.2	10.6	3.7	2	23	731	753	730	753	0.96
8	12	0.035	4.1	8.9	2.7	3	23	768	789	766	789	0.94
9	12	2e-05	0.0023	19.1	0.2	2	23	834	856	834	856	0.94
10	12	7	8e+02	1.6	1.8	1	23	939	963	939	963	0.95
11	12	5.6e-05	0.0064	17.7	0.0	2	23	979	1001	978	1001	0.96
12	12	0.014	1.6	10.1	0.5	1	23	1073	1096	1073	1096	0.98

Sequence Information

Coding Sequence: ATGTCGTCCAGCCAGGAGGCCTGCCTGCCCGAGTCGACGGAGATCGATAGCGAGGGTTCGAGCTGCGAGGAACGGGAATCCCGCAGGCGGCTACTCGGCGATCCCGAAGGCATACCGAAGAAGCGGCGAAAACAGTCGACCCCCATCAAGTTCTCGACCTCGGTGAGCGTAAGCGGCGAGTGCGACGAGTCCGATGAGGAGTCCGCCGCGAACAATCACGAACAGCGTGATTACGAACAGCCGCAACAGCAGCATCACCACGAGCTGGAAGGTAAGCCGTCGACCTCGCCGCTCTCTAAATCCATCCAGGGCCATCAGACGATAAAAGACGAGAATCTGAACAATGAATTCCGCTGCCAGTATTGTAGTCAATTTTTCGGTAACCGCGGTGCGCTCGAGCTGCATCTCGAATGCGAGCACAATTACGGTCTCTCGATGAGCAACGTCGCGCTgcagcagcaccagcagcaacagcagcagacAATGATGAGTAACCGCGAATCGCCGCAGATGCAGATTCACTCGCGTGCGAGCCCAGAGACGACCGGCCAGTCGCAGAACTCGGACCACTCCATCAGCCCAATAAATCTCTCGGGTATTAGCATTAGGAACTTTGCGGCGAGTACGTCCTGGTTGTCGGGTCAGGGACAGATGCAGGCGCAGAATGAGGCTTCGCTCGCGAAGATGACCGCGAGGAACAATAATCACTTTCAGCCGATGCCCGCGGGTTTCCCAGGTCCCCTCGCTCAGTTCTTGACGATGCCTGGCTTCCCCATCCCGGATTCCACGCAGATCCAACGAGCGGCAATGGGACAGTTTCCAAAGATATTCAACCCCGACGCATACTGTGATCTCTGTAATAAGGAATTTTGCAACAAGTACTTTCTTAAGACGCACAAGGCTAATAAGCACGGCATTTACGTTGATCCACCGATCACCAACCAGTCGCAAAGTAATGATGGTGCTCCCACGAGTCCTTTCATCACTACAACTAGTCCGTTAAGCAATTTGCCCGGAAATATGAATGTGAAAGTGGTTGAACAAACACAAAGACTTGAAAATAATGGTATGCAACAGCAAGCGCAGCAACCAACGTTACCTTGTGATATGTGTCCTAAGCGTTTCAAAAACGAGGATTCTTTGAGAAAACATAagcaaaaaattcatattaatcAAAACAATGACTCGATCGATCCGCCTTCTTATCCATCTTCATCTGTTGACGAAGAAAGGCAAAGTCCTGGTGGTATGGAAACACTTTTCAAGCAAGAGTACAACGTAGACCAAGACGAAAACAGTTATCCTACTACCCCAAGACCTAGCACAATGTCACCTCCAGCTGCTCAACAAATTAAAGAAGCCGCATTCAACGGTGAACGTTTACGGCGCCTCGGTGTCATGAATCCTGAAGCTTTTTGTGAACTATGCTGCAAGGAATACTGCAACAAGTATTTCCTTCGAACGCACAAGCTGAAAAAACATGGTATTTTCATTCCTGACAACGAAAAATCACCAAATGCTCCAGGTTCCGGACCAACCTGGCATCAAGTGCAAACCAGTCCGTTAAATCTCATAATGCAGGAAGGCCTTGGAAATGGATCGGAGTCTGGAGATCGGACAGAGGAATATGCTTGCAAGTCTTGCGGGATTCGCTTTCAAACTCAAGGGCTTTTCCATTTGCacatggaaaaaattcatgatagTTTAGAACAGTCATCGTCTCCTAAACTGGATCAAGAAGCCGATTCTATGGATCAACGCACTGACTCTATTTCCGAAGATCTTCAAAAATTGCAGACAATGATTTTTCAACTGAATGGCTTGGAATCAAATAAGGCAGCTTCTTGCGCTCTGTGTGGTAAAGACTACGATACCCCTACTGCTTTGAAGAATCACATGATTGCCGAGCACGGTGTAGTGCCAGAGAATTTAACATCGCCTCAGCAGCAACAATTGTCTAGAGATAAATCATCACCTGTTGCCGTGGCTACTCCAGTATTCTGCTCCCTCTGCGAAAGAGAATATCCCAACCaagaaattttgagaaaacatATCGCGGAAGATCACCAGCCATCAACGCCAACCAGTTCTACGCCTCAACTTCCTTCTTCGGTAACATCTACTCCAAAATCAAACTCCTCGCAGCAGGTTGAACGGAAAGCGACTGCTAACATCACTCCCACTTCGAGCTACTGTGAGATCTGCAATAAAGAATTGTGTAACAAATACTTTATGAAAACCCACATGCAGAAGATGCACGGTATTGAAATAGAAAACGGTGCACAAATCGGCGGAGTCATATGTAACATCTGTAAAAAGGAACTCTGCAGCAAATACTTTCTGCGGGTTCACAAACAAAATACTCACGGCATCGTCGAAGAAGGTGCATCCACCGGAAAGCAGGAGAACTTTGAACCTCCTCAGAACGCCGAGGATTTGGCCCTGAAGCCAGAGCAGCTTGGTGATCTCAGTCTTCGATACATCACTCACTTTACAGAGGTCTGTCCGATTTGCAACCGTCGTTTTCGCAGTCCAAAATGGCTTAAGGTGCATCTGCAAGGTGAGCACGGCAAGGCTGGAATAGATAAGTGGCGTGAAATCGAGCAGTACCATCAATCAATACCGAAGACCCCATCTCGTAGCTCCGGCAGCTCGAAAAATACTCAACCGCCACAGTCTCATGCAAACACGAGTCTGAGGATACCTAATGGCTTTGAACCGAGTCAACAGATTAGAGCAGACTTGGCAGCTCTGGGCAATCAAGTTCTCTCCAATTTCTTCGGTTCATCAGCGGACGACCAGCAAGGGCAAACGTATCGCTGCTCTCAAccacattgtaatttttctacaaacaTTTTACCTCTCTTCTTCTTGCACGAGAGATCGCACAATCATCAACAAGAAAACTCATCGATTGACAACGAACGAATAATTCAGTGTCCTATTTGTGCTCAGACCTTCGCTCAGCCTGAATTGTTGAGGCAACACATAGCAACCCGACATCCTAGCCCATTTCCTGGGTTACTCTCGCAATTCCCTCTACCTTTACTGAGCGAATTCGGCATGAGCAACGAGCAACAATCTCAGCAACATGATTACGTCGACATGAAGGAGGAGCTGCGCCAGCCAAGTCCTCAAATCATGAACGAAATAGACACGAACAAGATGAAGAAGCAGGAAGAAAACAACGCGGTACAAGTGATGCCACAAGGCGCTTACAAGTGTGCCCAGTGTGGATTCGCCACAGCGAACCTGAACCGCATCAAGAAGCACATAAGGAAGGATCACAAGTGTCTGGGCGACCCGGCAGAGACGGCCCTGGCCGAGCTCTCCAAGACTTTGAAGGATGTCGCCAACAAGCACAAGGTACCGGCGAGCTATGCCATGCCGCAAGACGCTAGCCTCACGCCCGATAAAACCATCATGCAGCCGTTCATAATCGAGGAGCTCGAGAACCCGCAGAACGGTGGTGGCAACAACGAGGAGGTCAGCCAGGCCTCCAGGCGATTCGCACCAGCCCTCGTTTTCCTGCCAGTCAAAACGAGGGTCAGTGGTGCCCTCACGCTCTCCTTCACGCTGAATCCCGCCTGA
Protein Sequence: MSSSQEACLPESTEIDSEGSSCEERESRRRLLGDPEGIPKKRRKQSTPIKFSTSVSVSGECDESDEESAANNHEQRDYEQPQQQHHHELEGKPSTSPLSKSIQGHQTIKDENLNNEFRCQYCSQFFGNRGALELHLECEHNYGLSMSNVALQQHQQQQQQTMMSNRESPQMQIHSRASPETTGQSQNSDHSISPINLSGISIRNFAASTSWLSGQGQMQAQNEASLAKMTARNNNHFQPMPAGFPGPLAQFLTMPGFPIPDSTQIQRAAMGQFPKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDPPITNQSQSNDGAPTSPFITTTSPLSNLPGNMNVKVVEQTQRLENNGMQQQAQQPTLPCDMCPKRFKNEDSLRKHKQKIHINQNNDSIDPPSYPSSSVDEERQSPGGMETLFKQEYNVDQDENSYPTTPRPSTMSPPAAQQIKEAAFNGERLRRLGVMNPEAFCELCCKEYCNKYFLRTHKLKKHGIFIPDNEKSPNAPGSGPTWHQVQTSPLNLIMQEGLGNGSESGDRTEEYACKSCGIRFQTQGLFHLHMEKIHDSLEQSSSPKLDQEADSMDQRTDSISEDLQKLQTMIFQLNGLESNKAASCALCGKDYDTPTALKNHMIAEHGVVPENLTSPQQQQLSRDKSSPVAVATPVFCSLCEREYPNQEILRKHIAEDHQPSTPTSSTPQLPSSVTSTPKSNSSQQVERKATANITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIVEEGASTGKQENFEPPQNAEDLALKPEQLGDLSLRYITHFTEVCPICNRRFRSPKWLKVHLQGEHGKAGIDKWREIEQYHQSIPKTPSRSSGSSKNTQPPQSHANTSLRIPNGFEPSQQIRADLAALGNQVLSNFFGSSADDQQGQTYRCSQPHCNFSTNILPLFFLHERSHNHQQENSSIDNERIIQCPICAQTFAQPELLRQHIATRHPSPFPGLLSQFPLPLLSEFGMSNEQQSQQHDYVDMKEELRQPSPQIMNEIDTNKMKKQEENNAVQVMPQGAYKCAQCGFATANLNRIKKHIRKDHKCLGDPAETALAELSKTLKDVANKHKVPASYAMPQDASLTPDKTIMQPFIIEELENPQNGGGNNEEVSQASRRFAPALVFLPVKTRVSGALTLSFTLNPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00714631;
90% Identity: iTF_01380829;
80% Identity: -