Basic Information

Insect: Sycophila texana
Gene Symbol: -
Assembly: GCA_035582955.1
Location: JAWWEN010000020.1:16146426-16147463[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.01 1.2 10.6 0.2 1 23 87 110 87 110 0.95

2 9 0.0096 1.1 10.6 4.8 1 23 120 143 120 143 0.97

3 9 0.0034 0.39 12.1 1.9 1 23 148 170 148 170 0.98

4 9 2.9e-05 0.0033 18.6 1.1 2 23 177 198 176 198 0.97

5 9 0.0009 0.1 13.9 0.6 1 23 204 226 204 226 0.95

6 9 0.059 6.8 8.2 0.8 1 23 235 257 235 257 0.97

7 9 0.00013 0.015 16.5 0.0 3 23 264 284 262 284 0.97

8 9 2e-06 0.00024 22.2 1.1 1 23 290 312 290 312 0.99

9 9 6.2e-05 0.0072 17.5 3.9 1 21 320 340 320 341 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.01	1.2	10.6	0.2	1	23	87	110	87	110	0.95
2	9	0.0096	1.1	10.6	4.8	1	23	120	143	120	143	0.97
3	9	0.0034	0.39	12.1	1.9	1	23	148	170	148	170	0.98
4	9	2.9e-05	0.0033	18.6	1.1	2	23	177	198	176	198	0.97
5	9	0.0009	0.1	13.9	0.6	1	23	204	226	204	226	0.95
6	9	0.059	6.8	8.2	0.8	1	23	235	257	235	257	0.97
7	9	0.00013	0.015	16.5	0.0	3	23	264	284	262	284	0.97
8	9	2e-06	0.00024	22.2	1.1	1	23	290	312	290	312	0.99
9	9	6.2e-05	0.0072	17.5	3.9	1	21	320	340	320	341	0.94

Sequence Information

Coding Sequence: ATGGACGAGGAAGAATTGGACGAGATCAAGGACAACGAGGGTGAGATCGATTACGAGCGTCTGGAGGTGCTCGATGAGCGGGAGACCACCGAAGACCAGGACGACAAacaggaggaagaggaggaggatgaCAATGATGACAATCCCGTGGCGATCGCCGACGATTCCTGCGAGACTCAGGTAAGCGAGTCGAGCTCAACGGCCGAGCCGATCCGCAGCCTACTGGTCCGCCTGGAATCCGGCCTCGTGAAGCACATTTACCAGTGCAGCATGTGCGAACAGGTCTTCGCTAGCGTGAAGCAGTCCGTCCAGCACATAAGCACCGTCCATCCCCGCAGCCGCAAGTACCGCGTCGCCTACCGCTGCAAGACCTGCCAGAAGCTCTTCCGCACGAAGTACGGCTGCGAAAACCACATCCAGGTGAAGCACAAACAGCGCAGCTTCCAGTGCCGCTACTGCGAATTCAAGACCGCCAGTCCGAGCTACATCAAGAAGCACGAGCGCAACCACCTAGACGACTTCGAGCTCAGGTGCGAGCACTGCGAGCGCGGCTTCTCCAGCAAGGCCGTGCTCGACAGGCACATGATGAGCCATACCGGCGAGAAGCCCTACGTTTGCCAAGTATGCAACGCCTGCTACGCGGATAATCGAAGCTTGCAGCTGCACGCGACTCTGCACGACCCCGACGGCCGACCCAAGAAGTACACCTGTGACCAGTGCGACTACTCCAGCTTCTGGAGGAACGCCGTCAAGACGCACATGAAGGTGCACACCGGCATCAAGGTCATCTGCGACGAGTGCGGACAGGCCGTCGCGAGTAACTATTATTTGAAGATTCACAAGAGGATACACAGCGGCGAGAAGCCGTTCACCTGCGACGTTTGCTCCAAGGGCTTTCGGCAGATGAAGAATCTTGTTGTGCACCAAAAGACTCACAGCAAGGTCAAGATAAAACCTTACAGCTGCGCCGAATGCCACAAGAGTTTCACGCAGAGCGTCTGGCTGCGGAAACACAAGTGCAAACCCCCTAACGCGTAG
Protein Sequence: MDEEELDEIKDNEGEIDYERLEVLDERETTEDQDDKQEEEEEDDNDDNPVAIADDSCETQVSESSSTAEPIRSLLVRLESGLVKHIYQCSMCEQVFASVKQSVQHISTVHPRSRKYRVAYRCKTCQKLFRTKYGCENHIQVKHKQRSFQCRYCEFKTASPSYIKKHERNHLDDFELRCEHCERGFSSKAVLDRHMMSHTGEKPYVCQVCNACYADNRSLQLHATLHDPDGRPKKYTCDQCDYSSFWRNAVKTHMKVHTGIKVICDECGQAVASNYYLKIHKRIHSGEKPFTCDVCSKGFRQMKNLVVHQKTHSKVKIKPYSCAECHKSFTQSVWLRKHKCKPPNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01380827;
90% Identity: iTF_01380827;
80% Identity: -