Basic Information

Insect: Sycophila texana
Gene Symbol: Clamp
Assembly: GCA_035582955.1
Location: JAWWEN010000048.1:15095799-15101984[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.7e-05 0.0019 19.3 2.4 1 23 165 187 165 187 0.98

2 8 0.00033 0.038 15.3 0.4 1 23 219 242 219 242 0.93

3 8 9.3e-05 0.011 17.0 2.6 1 23 341 363 341 363 0.97

4 8 1.3e-05 0.0015 19.7 0.1 1 23 369 391 369 391 0.98

5 8 5.6e-06 0.00065 20.8 4.4 1 23 397 419 397 419 0.98

6 8 4.8e-07 5.5e-05 24.2 1.9 1 23 425 447 425 447 0.99

7 8 4.9e-06 0.00057 21.0 1.0 1 23 453 475 453 475 0.98

8 8 4.7e-05 0.0055 17.9 0.6 1 23 481 503 481 503 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.7e-05	0.0019	19.3	2.4	1	23	165	187	165	187	0.98
2	8	0.00033	0.038	15.3	0.4	1	23	219	242	219	242	0.93
3	8	9.3e-05	0.011	17.0	2.6	1	23	341	363	341	363	0.97
4	8	1.3e-05	0.0015	19.7	0.1	1	23	369	391	369	391	0.98
5	8	5.6e-06	0.00065	20.8	4.4	1	23	397	419	397	419	0.98
6	8	4.8e-07	5.5e-05	24.2	1.9	1	23	425	447	425	447	0.99
7	8	4.9e-06	0.00057	21.0	1.0	1	23	453	475	453	475	0.98
8	8	4.7e-05	0.0055	17.9	0.6	1	23	481	503	481	503	0.97

Sequence Information

Coding Sequence: ATGGCTCTAGAATCAAATGGTAACAACGTGGTGTGGTTGAGCACAACGCGAGCCGATCAAATACAGCAGGGTCAACAAATCCAGGCACCAGTGAAGTGTTCCATGTTTACACAAACGGAGCAGACCAACAGCTTTACACAGACTGAGCAAAGCAACTCCAGCTACGCTGATCAGCGGCAGCCTCAGCAAGCTACAATGTTTGACCCCCAACAAATTCAGCAGCAAGCTGCTCAGGGTCAGCagtcgcagcagcagcagactCAGCAGATGTATGTGACAACTGAGAAGAAGGAAGACAAATCGGGACAGCAAACCGCCACCGCGGAATTTCCTTATTTCTACAATGTTAACATGCTGCAAAAAGTGCAAGCGAACGCGGTGGGAACGATTGGTGCCATCACCACCGATGACAAGGGTTGCTATCGTTTCGATGTTCAACCAGTCGGTTACAACACTCTCATCAACCAAATGAACCTAGCTGCGAACACTACATTCAAGTGCGACATATGTGGACTCGTGTTCGGTCACATGAGTTTGCTGAATCACCATAAGCGCATACACAACTCGACTCCGAGTAATCTGCAGCAACAGCCTCAACAGGTAGTCGTGCAAACGCCTACGACGGTGACGGTGGCCACTACTCCAGAAAGGCCGTACACTTGTGATGTTTGCGGGGCATGTTTTGCCCTTCCTGGAGAGCTGAAGAGTCACAAAACAAATATGCATCAAAAGCCAAAAGTGCAGATATGCGAGGATTGTGGAAGTGAAGATCCTTGCGAACACCACcccactaaaattaaaaaaactatTAAACCTGGTCATCATCCAGTGAAGCGGCGTGGTGTAACCAGTGTAACCAAATGTCACAAGTGCAATGGTACaggcataatttttattgGTAAACACAACGAAAAACTAGATTCCGGAATCAGTTCCCTCGCTAAGTGTAGCGGCTGCAAGGCAACAGGCCGCATCATCATAGGAAGCGGCAAAGCTAACAGTCAACAGCAGGAGAAGCCATTTCACTGTAACGTTTGCGATGGTACATTCTCAAGATATTCGTCGTTGTGGTCTCACAAGAGACTTCACTCCGGCGACAAACCATTCAAATGTGAAGTCTGTGGTTTAGCTTTCGCTAAGGCGGCGTACCTGAAAAACCATGGTCGCGTGCATACGGGTGAAAAGCCGTTTAAGTGCAGCCATTGCGGCATGCAGTTTTCACAGTCGCcacatttgaaaaatcacgaGCGTATACACTCGGGCGAACGTCCGTATCAGTGCGAGGTCTGCGAAAAGACTTTTGCCAGGCACTCGACACTGTGGAATCACCGCAGAATTCACACCGGCGAGAAGCCCTACAGATGTAACATTTGCGGCTCAGCTTTCAACCAAGCTACGCATCTCAAAAACCACGCCAAGGTTCATACTGGGGAAAAGCCTCACAGATGTGACATCTGTGAGATCGGTTTCTCAGACCGATTCGCCTTAAAGCGACATCGAGCGATCCACGAGAAGTACGGCCAGACGGCGGCGCGTAACAGCAATGCGAACCAGAGCAATGCCCAACAGGCGAACACGAGTAGTCAGCAGCAGGCACAGGCACAACAGCCGCAACAGCAAGTAGTCGTGGTGAATGCGGCGACTCCAGTGACGGTTAGTCAAGGCCAGGGCCAGACAGTCATGCTCGACGAGGTGTACAAGTGCCAGGTGGCATTCCCCGAGCCCAAATGA
Protein Sequence: MALESNGNNVVWLSTTRADQIQQGQQIQAPVKCSMFTQTEQTNSFTQTEQSNSSYADQRQPQQATMFDPQQIQQQAAQGQQSQQQQTQQMYVTTEKKEDKSGQQTATAEFPYFYNVNMLQKVQANAVGTIGAITTDDKGCYRFDVQPVGYNTLINQMNLAANTTFKCDICGLVFGHMSLLNHHKRIHNSTPSNLQQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKIKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHNEKLDSGISSLAKCSGCKATGRIIIGSGKANSQQQEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSHCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTAARNSNANQSNAQQANTSSQQQAQAQQPQQQVVVVNAATPVTVSQGQGQTVMLDEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00845407;
90% Identity: iTF_01524203;
80% Identity: -