Stex004733.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- PRDM5
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010000020.1:16165519-16168764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0071 0.82 11.1 1.1 1 23 155 178 155 178 0.93 2 17 1.1 1.3e+02 4.1 2.1 3 23 189 210 187 210 0.95 3 17 1.1 1.3e+02 4.1 2.9 1 19 216 234 216 237 0.84 4 17 6.4e-05 0.0074 17.5 0.2 1 23 248 271 248 271 0.95 5 17 0.0048 0.56 11.6 1.3 1 19 287 305 287 306 0.96 6 17 5.9e-06 0.00068 20.8 2.2 1 23 321 343 321 343 0.95 7 17 0.00044 0.051 14.9 0.1 1 23 349 371 349 371 0.97 8 17 0.00014 0.016 16.4 1.4 1 23 377 400 377 400 0.97 9 17 0.048 5.5 8.5 4.1 3 23 540 561 538 561 0.97 10 17 0.00024 0.028 15.7 4.3 1 23 567 589 567 589 0.96 11 17 0.048 5.5 8.5 6.2 1 23 598 621 598 621 0.96 12 17 0.00088 0.1 13.9 3.1 1 23 627 649 627 649 0.96 13 17 2.5e-05 0.0029 18.8 1.3 1 23 654 677 654 677 0.96 14 17 0.02 2.3 9.6 2.1 1 23 683 705 683 705 0.98 15 17 0.0027 0.31 12.4 4.9 1 23 709 732 709 732 0.96 16 17 0.37 42 5.7 1.2 3 23 740 760 739 760 0.97 17 17 0.0001 0.012 16.9 1.3 1 23 766 789 766 789 0.95
Sequence Information
- Coding Sequence
- ATGCTACATCGCGAAGCCAAGCCCAGCAGCTCGGCGACTTCGTCAGTACGAGGCAGCGTCTGCGAGGACGAGGAATCCATCGGTTCTACACCTGTGACCAGATCAGCTAAAAATCGTTTCAGGGAACCATCGAACAAGAGCAACCCAGCACCAGGAAGCGAGCCACCAGCGAAGAAGCCCAATCTCCAGAGTAAGTGTACCGTGGAAACCGCCAGTCCTGAAAGCCCTTCAGtcgcgaaaaaatatttcctgcGTGGTGGAGCGTCGAGGGATGGAGCGAAGGACGAGCAGGCCGACGACGTGGACAAAGATGATCTGATGACTCTACTGGCTATGTACAAGGAATTACCGGATGGCGGCTTCGTGTGTCAACTGTGCGATGACAAGGAGGGCGTCAACGTGCTGCAAGACAAGCCGCGCGTCGTGCGACATGTGATCCGAGCCCACGGCTTCAGCCATGCCCACGAGTGCCTCAGCTGTCCCAGCAGCTTCAAGCGGGAGTCCTATCTCACGAGCCACGCCGAGTCGCTGCACAAATCCGAAAAACTCGAGCGCTACATCGACTGCACCAGATGCTCGCACCGCAGCAAGGATGAAACTCTCCTCAGGCTCCACGTGCTCAGGAAACATGTGGCCGTTTACCGGTACGTCTGCGGCTGCTGTGGCAAGTGCTTTAGGACCTTCGCGGCCAAAAACGAGCACGAGAAGCTCGCCGGGTACAGGAAAAAATCCAAGGCCAAATTCGAGTGCGACAAGTGCGACGTCGCCACTAAAACCAAAGAAGACTTGGAGAAGCACATAAAAGATGTTCATTCTCGATGCTTTTACAGGATGATCTACAGATCATCGAAGCTGCAGTACAAGTGCCTGATATGCACAAAAATATTCGTCACGAAGAAGTCCTTCCACGAGCACGCCCCTTGCACGGACAGCCCGGTCGAGGGCAACGAAGTGGACGGCTTCCTGTGCAGCGAGTGCGGCAAGCGACTGTCCAGCAAGGACCACCTGAAGAAGCACGCGCGCGTCCACAGCGGCGAGCGACCGTACCCCTGCCCAGAGTGCGGTCAGACCTTCGCCCTGCGCAACACCATGCGCATCCACGCGCTCTCCCACTGCGGAATTAAGCCCTACGTCTGCGAGATCTGCCATTTCAATTACTCACAGCGATCGGCACTTATGATACACTGGAAAAGCAAGCATAAGGGCCTGCCGCCCCCGCCTCCCGTCGAGATCCATCAGTACTTCGACGCCAGCGGCCAGCTGCTCTCCATGAAATGCAAAACTCGTTTGAGGAATAAGACTTTCAACTCCAAGATAAGAGTACGCACAACTTCAGAACTTACAGTCGCTCCACAAGCTCAAGCCTTGAGTGCAAGATTTACTTCACCCAAACTTTTAATAGAGCCGTTAACGATTATGCCTAAGAAAACTAAACCAGTCGCTTCCAAGAGGAAGAACGCTGTTTCAGCCGTTAAATCTAAGGAGGTAGAAACGACTTCAGACTGCTCTGCGTCTCCCGATAAAAAGTTCAAGGTCGACGACCTGCTGAAAGAAGAAAGTAAAccaaaagagaaagaaattctctattacaaaaaattaaaaggcgGTGGTTTCGGCTGCAAGGTCTGCCTCCAAAAGTTCAGCCACCGTTACAAGGTGAAGCAGCATCTAAAAATGAAGCACAAACCACGCGAGATCTTCACTTGCTCCGACTGCGGCAAAACTTTCAAGACCAAGTACCAGTGCAACGTCCACGCCAACCAGCATCGCGAGAACAGTAACGATTATCTTTACTGCTGCGACAAGTGCGACTATCGTGCCAGATCCAAGCACTACCTCAAAACCCACGTGATTCGCAAGCACACCACAGAGTACAAGTTCGAGTGCGATCACTGCGGCAAACGCTTCAAAATGAAGATGGACCTGAAGTTCCACCTGGGCACCCACGGAACCTCGCAGCACATGTGCGACGCCTGCGGCCGCATGTACACGAGCCGAGACTCGCTCCAGAAGCACCGCCGCGTCGTCCATCTGAATGAGTACAAATTTCAGTGCGACATCTGCCATCAGAAGCTGCTCACAGAGGAGAACTTCAAGAGTCACATGGAGTCGCACAAAATGATGCACAGCTGCGACGAGTGCAACCTCAAATTCACCAAGAAGTACTACGTCACGCGGCACAAGAAACGCGTCCACAAAGTCGAGAAGACGAAGCTGTGCCGAGTGTGCAGCAAGGCGTTCGTTTGCATGGCGACCCTCAGGGTGCACTACTTGACTCACGTGAAGGTCAAGCCGTACTTGTGCAACGTGTGTGGCTTCAGCTTCACTCAGCGTTCCTCGATGATGCTCCACTGGAAGAGGAAACACCCGGACGCGGAGGAGCCCCCTCCGCCAGTGatacttactaatttcttcGATGCCATAGAGTCTGAAGTCGATAGGATCGCCGAGAAGAACAAATCTGAACTGAACGTCAGCGAGTCCTGA
- Protein Sequence
- MLHREAKPSSSATSSVRGSVCEDEESIGSTPVTRSAKNRFREPSNKSNPAPGSEPPAKKPNLQSKCTVETASPESPSVAKKYFLRGGASRDGAKDEQADDVDKDDLMTLLAMYKELPDGGFVCQLCDDKEGVNVLQDKPRVVRHVIRAHGFSHAHECLSCPSSFKRESYLTSHAESLHKSEKLERYIDCTRCSHRSKDETLLRLHVLRKHVAVYRYVCGCCGKCFRTFAAKNEHEKLAGYRKKSKAKFECDKCDVATKTKEDLEKHIKDVHSRCFYRMIYRSSKLQYKCLICTKIFVTKKSFHEHAPCTDSPVEGNEVDGFLCSECGKRLSSKDHLKKHARVHSGERPYPCPECGQTFALRNTMRIHALSHCGIKPYVCEICHFNYSQRSALMIHWKSKHKGLPPPPPVEIHQYFDASGQLLSMKCKTRLRNKTFNSKIRVRTTSELTVAPQAQALSARFTSPKLLIEPLTIMPKKTKPVASKRKNAVSAVKSKEVETTSDCSASPDKKFKVDDLLKEESKPKEKEILYYKKLKGGGFGCKVCLQKFSHRYKVKQHLKMKHKPREIFTCSDCGKTFKTKYQCNVHANQHRENSNDYLYCCDKCDYRARSKHYLKTHVIRKHTTEYKFECDHCGKRFKMKMDLKFHLGTHGTSQHMCDACGRMYTSRDSLQKHRRVVHLNEYKFQCDICHQKLLTEENFKSHMESHKMMHSCDECNLKFTKKYYVTRHKKRVHKVEKTKLCRVCSKAFVCMATLRVHYLTHVKVKPYLCNVCGFSFTQRSSMMLHWKRKHPDAEEPPPPVILTNFFDAIESEVDRIAEKNKSELNVSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01380799;
- 90% Identity
- iTF_01380799;
- 80% Identity
- -