Basic Information

Insect: Sycophila texana
Gene Symbol: mecom-b
Assembly: GCA_035582955.1
Location: JAWWEN010000009.1:10444477-10455975[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0069 0.8 11.1 0.4 2 23 100 122 99 122 0.93

2 9 0.12 14 7.2 0.2 1 23 129 152 129 152 0.92

3 9 9.1e-06 0.001 20.2 0.7 1 23 158 185 158 186 0.93

4 9 5.1e-06 0.00059 20.9 2.6 1 23 192 214 192 214 0.95

5 9 3.1e-05 0.0036 18.5 5.0 1 23 220 242 220 242 0.99

6 9 0.028 3.2 9.2 0.6 2 21 250 269 249 270 0.94

7 9 2.7e-08 3.1e-06 28.1 1.7 1 23 659 681 659 681 0.99

8 9 3.9e-07 4.5e-05 24.5 1.7 1 23 687 710 687 710 0.97

9 9 8e-06 0.00092 20.3 3.5 1 23 716 738 716 738 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0069	0.8	11.1	0.4	2	23	100	122	99	122	0.93
2	9	0.12	14	7.2	0.2	1	23	129	152	129	152	0.92
3	9	9.1e-06	0.001	20.2	0.7	1	23	158	185	158	186	0.93
4	9	5.1e-06	0.00059	20.9	2.6	1	23	192	214	192	214	0.95
5	9	3.1e-05	0.0036	18.5	5.0	1	23	220	242	220	242	0.99
6	9	0.028	3.2	9.2	0.6	2	21	250	269	249	270	0.94
7	9	2.7e-08	3.1e-06	28.1	1.7	1	23	659	681	659	681	0.99
8	9	3.9e-07	4.5e-05	24.5	1.7	1	23	687	710	687	710	0.97
9	9	8e-06	0.00092	20.3	3.5	1	23	716	738	716	738	0.99

Sequence Information

Coding Sequence: atgCTGTTTTCGTCGTTCGACGACTCAAAGGACTGGATGAAACTGATCAGGGTCGCGACGAATCCCGAGGAAGTAAATCTGCGGAAAATTAAGGACAAGGATGGAAACATTTACTTAGAAGCTAGCCGTAATATATCCACGAGGGAGAAGCTGCTGCTGGGCTGCCCGGAGTCGTCGCTCTGTCCGACGCAGCGCCGGCTGAACAACGAGGACGAGAACACGAGCGAGTACGcTTCGCAACATAGCGGTCAGTCTCACGCGGATGAGGACAGAGAAGACGAGGAGGACGGTGAGATAAGGTGTACAGTCTGCGACAAACCCTTCCAGGACATTGAAGTcttGAACAAGCATCTGGTGATTTGCCATCGATACCCAATAGATGAGCACGCCTGCCTAAATTGTCCGAAAAGCTACTCCTGGCGACCGCTGTTGGTACGTCACCGTGCTATTGTCCACGGAGACATCCGCAAATACCCCTGCGAGAATTGTCCCAGGTCGGACGATCCGCAGGTATTCACAGATCCGTCGAATCTCCAGCGGCACATACGCACCCACCACGTCGGGGCACGTAGCCACGCGTGCACTGAGTGCGGCAAAACCTTCGCGACGAGCAGCGGCCTGAAGCAGCACACCCACATCCATAGCAGCGTCAAACCGTTCCAGTGCGAGGTCTGCTTCAAGGCGTACACACAGTTCTCGAACCTCTGCCGACATAAGCGCATGCACGCCAAATGCCGCGCGCAAATCACCTGCGGCAAGTGCAGGGCCCAGTTCAGCACCGTCACCTCGCTCACTAAGCACAAACGCTTCTGCGACTCTACAGCTCCTCCGCCCTCGCGACAGGCCCAGTCGGCCGGCATTTCACCCGGGATGCCTCAACCCCATTCGAATCCGTTCCTCTTCCCGAGGCAACCGCTGCCCTTTTATCCACCGCTCTTCAACCAGTACTCGGCCCAGATATTCCGAAACAACGAGTCGCCGGCggccgcagcagcagccgcggcTGCTGGTAGCTTCCTTGGCCTGCCGATCGTCTTCCCACCGAAACCCGCTACGGCGGCGGACGAGCAGCCCACGATGAGTGAAAGAAGCCGCGAGCACTCGCGCCTACCCGAAGAGAGGTTTACGCCACCGCGAGCAGTCCCACCAGCGACTTCGGCCCAGCAGTCGGCTGCCAGCAAGGTATCGCCTTCCGCTGCCGAAGAGGCTACTTCGAGTCTCAGGCCCTCGCCAGCGCGGCCACCACCGGCTCAGTCTGGATCCGAGGAAGCGAGTCAGCTGCTGTTGAAGAGGAAGCACAGCCCCAGTCGACCCGAGCAACGTCAGCAGGACGGGGACGCGGAGCAGCCCTTGGATCTGAGCGTGCGACCAAAACGCCCCAAGCTCGAAGAGGAGAACGACGGCGACGCGGAACCCGAGGTAGATTCCGAGCCAGAACCGACTCCCAGCCCAGGACGCAGACGCAGCGAGGAACCCAGTCATTCGCGACCCTCCAGCAGAGTCAAGAGCGAGCAGCGCTCCGAACGGCCACCCTCGGAGGGCAAAGACTTGGGCAGCCCATTGGCAAGGAATACCATGCCGGCTCCTCCAGCGGAAAATCAACACCCGCAGCACCAGCCGGTCAGGACGCCTACGCCCCCACCAGCTCCCCAGCCACACATGGCCTACCCTCGACCCATTCATCCGTTGATACTCGAATCTATGTACCGGAACCCCTCGAACCCATTCCCCGGATTTCCGGGTGCAGGTCCCGGTGACCACCGCCTTCTGCAACCGCTACCCTCGTTCGGACCCTCTCGCGGCCTGCCCTTCCTGGGACCCCTGATGAACGGCCTCGGCGGCCCTCGAACCGGCGGTTACGATATGCTCTCACGGGCGCCTCTCAGTGGCTTCAAGCCCTTCCAGGACTCGGTGATGGCCGCGGCTCACCACCATCAGCAACCCGGACCCTTCACCGGCAAAATCAAAGACCGCTACTCGTGCAAATTCTGCGGCAAGAACTTCCCGCGCTCGGCCAACCTCACCCGGCATCTGCGCACCCACACCGGCGAGCAACCCTACAAGTGCAAGTACTGCGAGCGCAGCTTCAGCATTTCCAGCAACCTACAGCGGCACGTGCGCAATATCCACGACAAACAGCGACCCTTCAAGTGCCCGATGTGCGAGCGCTGCTTCGGCCAGCAGACGAATCTCGACCGACATCTGAAGAAGCACGAGGCCGACGACGGTAGCGGCGTCGTCTCCGTCGCCGACTCTGCCGACAGCAGTAACGAAAACGAGCGCGAGGACACATCCACGTACTTCGACGAAATCCGCTCGTTCATGGGCAAAGTAACGTACGGGGGTGGTGCCGGCGGCGATGCGGCCTATGCCCTGCCGCCTCAGCACCCGGCCTACCTTCCCAACAGGCTGCGCGCGCCCCACGACTACCTCGACGGCATCCTCGAGAAGGGCAAGTACGACGAAGAGGACAGCGAGGATGGCGCGTCGCCTCTGGAGCCCGCCGGCGGACTGTCGCCGGTCGAACGCAAAGAAGCTTCACCCTTCGACCTGAAGATCGCTAGTAAACGCGAACTCCTGAACAACAACACCGCCGAGCCCGTCATCGAGATCACGACATAG
Protein Sequence: MLFSSFDDSKDWMKLIRVATNPEEVNLRKIKDKDGNIYLEASRNISTREKLLLGCPESSLCPTQRRLNNEDENTSEYASQHSGQSHADEDREDEEDGEIRCTVCDKPFQDIEVLNKHLVICHRYPIDEHACLNCPKSYSWRPLLVRHRAIVHGDIRKYPCENCPRSDDPQVFTDPSNLQRHIRTHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHAKCRAQITCGKCRAQFSTVTSLTKHKRFCDSTAPPPSRQAQSAGISPGMPQPHSNPFLFPRQPLPFYPPLFNQYSAQIFRNNESPAAAAAAAAAGSFLGLPIVFPPKPATAADEQPTMSERSREHSRLPEERFTPPRAVPPATSAQQSAASKVSPSAAEEATSSLRPSPARPPPAQSGSEEASQLLLKRKHSPSRPEQRQQDGDAEQPLDLSVRPKRPKLEEENDGDAEPEVDSEPEPTPSPGRRRSEEPSHSRPSSRVKSEQRSERPPSEGKDLGSPLARNTMPAPPAENQHPQHQPVRTPTPPPAPQPHMAYPRPIHPLILESMYRNPSNPFPGFPGAGPGDHRLLQPLPSFGPSRGLPFLGPLMNGLGGPRTGGYDMLSRAPLSGFKPFQDSVMAAAHHHQQPGPFTGKIKDRYSCKFCGKNFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPMCERCFGQQTNLDRHLKKHEADDGSGVVSVADSADSSNENEREDTSTYFDEIRSFMGKVTYGGGAGGDAAYALPPQHPAYLPNRLRAPHDYLDGILEKGKYDEEDSEDGASPLEPAGGLSPVERKEASPFDLKIASKRELLNNNTAEPVIEITT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01380794; iTF_00714609;
90% Identity: iTF_01380794;
80% Identity: -