Basic Information

Insect: Sycophila texana
Gene Symbol: -
Assembly: GCA_035582955.1
Location: JAWWEN010052760.1:312-6527[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.5 6.3e+02 2.0 4.9 1 23 341 363 341 363 0.97

2 19 0.0071 0.82 11.1 0.3 1 23 412 434 412 434 0.98

3 19 0.022 2.6 9.5 0.2 1 20 478 497 478 499 0.94

4 19 0.021 2.4 9.6 3.1 2 23 540 561 539 561 0.97

5 19 0.00027 0.031 15.5 0.1 1 23 603 625 603 625 0.97

6 19 0.00032 0.037 15.3 0.1 1 23 631 653 631 653 0.97

7 19 6.5e-05 0.0075 17.5 2.9 3 23 699 720 698 720 0.95

8 19 0.00021 0.024 15.9 2.0 2 23 728 750 727 750 0.95

9 19 0.00053 0.062 14.6 0.6 2 19 780 797 779 802 0.89

10 19 0.00019 0.022 16.0 1.6 1 23 834 856 834 856 0.93

11 19 0.043 5 8.6 0.1 2 20 914 932 913 932 0.95

12 19 0.0015 0.18 13.1 0.1 2 23 951 972 950 972 0.97

13 19 0.0026 0.3 12.4 4.6 1 23 1007 1029 1007 1029 0.97

14 19 0.045 5.2 8.5 3.1 1 21 1047 1067 1047 1071 0.89

15 19 0.1 12 7.4 0.6 2 23 1129 1151 1128 1151 0.93

16 19 0.022 2.5 9.5 3.6 3 23 1180 1201 1178 1201 0.90

17 19 0.00043 0.05 14.9 0.1 1 23 1208 1232 1208 1232 0.97

18 19 0.014 1.6 10.1 2.2 1 23 1237 1260 1237 1260 0.97

19 19 0.018 2.1 9.8 0.3 3 23 1292 1313 1290 1313 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.5	6.3e+02	2.0	4.9	1	23	341	363	341	363	0.97
2	19	0.0071	0.82	11.1	0.3	1	23	412	434	412	434	0.98
3	19	0.022	2.6	9.5	0.2	1	20	478	497	478	499	0.94
4	19	0.021	2.4	9.6	3.1	2	23	540	561	539	561	0.97
5	19	0.00027	0.031	15.5	0.1	1	23	603	625	603	625	0.97
6	19	0.00032	0.037	15.3	0.1	1	23	631	653	631	653	0.97
7	19	6.5e-05	0.0075	17.5	2.9	3	23	699	720	698	720	0.95
8	19	0.00021	0.024	15.9	2.0	2	23	728	750	727	750	0.95
9	19	0.00053	0.062	14.6	0.6	2	19	780	797	779	802	0.89
10	19	0.00019	0.022	16.0	1.6	1	23	834	856	834	856	0.93
11	19	0.043	5	8.6	0.1	2	20	914	932	913	932	0.95
12	19	0.0015	0.18	13.1	0.1	2	23	951	972	950	972	0.97
13	19	0.0026	0.3	12.4	4.6	1	23	1007	1029	1007	1029	0.97
14	19	0.045	5.2	8.5	3.1	1	21	1047	1067	1047	1071	0.89
15	19	0.1	12	7.4	0.6	2	23	1129	1151	1128	1151	0.93
16	19	0.022	2.5	9.5	3.6	3	23	1180	1201	1178	1201	0.90
17	19	0.00043	0.05	14.9	0.1	1	23	1208	1232	1208	1232	0.97
18	19	0.014	1.6	10.1	2.2	1	23	1237	1260	1237	1260	0.97
19	19	0.018	2.1	9.8	0.3	3	23	1292	1313	1290	1313	0.95

Sequence Information

Coding Sequence: ATGGACGACGTGGTGGAGATCAGCGGCTTGGAAAACGCCTGCAGATTATGCCTCACGACCGAGCAGACACGCTCCTCGATTTTTGGCGTGCCGCATGTATCTGTCCCTTTCGCCGAGAAGATACGCGCTTGTCTTTCGATTCAGATTTCTGCAAATGACAAGCTGTCAACACTAGTATGTGCGACTTGCATAAAGAATGTGAACCATTGGCATTCTTACAAAGATACCTGCTTAAAATCACAGGAGCGACTGCAGCAATGGTTAAgcaaacaaaatattgttcaaCCAATTGTTACTATAAAAGAAGAACCAGTAGATGTAGAATTTCAAGATGATAATGTACAAAATTCAGTGAATGATTCTacgaATGTACCACCTAGTATAGAGAATAATACCGTTCAAAATGCAGAGAATAGTTCATCAATTGCAAATACTGCAGGTGAAGCATCATCAGAAAATTATGTTGAAAGATTTGATAGAAATCATTTACCACCAGTACAAGTAAAAACTGAACCTATTGATACAGAAGATGAAGATGACTGTAATGTGGATGTTGAGTCTATTAATAGTGGAGAACTTCTAATAAATCCTTTAGCAGTGGCAGTAGTTAACAGTGTTAGCAGTGATCGTATTATGGAAGCTGATTCAACccagaaatttaaaacaaagaagTATGGAAGAAAGAAATTCCGTCGTGGTCCTCATACACACTTTAGAGGAGCtcgattgtttaaaaaaaagtgtattcaTTGTAAAATCAACTTACACTCCAAGTACTCTTATCAACAACACATGTCTAGATACCATGGTATTGCTAACAATGTAGGAGTAAATGTCACTTCTAAGCTTCctgcagtagcagcagcaacaaAACAAAAGTCAAAACTGACTGAACATACAATTAATATGGAGATTGATGATATTGCTGATATTAGACCAGAAGATGctgaatttacaaaaatgataaaaactgATCCACTGACTCCAGttcaaaaatgtattataggtcaacttaaaactttttcttgcTACTCatgtaaacaaacatttttagatCGACGACATACTCTAAATCACATTAGACAGCATATGCCAGATCTACGGCCATTCACTTGCATTGCTTGCCTTACTGAGTTTTCAGATAGATCCATGTATAAGTTACATTGTGGAGCATCTTTTGAGTGTGCAATGAAAATTGCTCTAGTTGTTCCTAAAGTTGgtcatgaaaaatatttcacctGTAATATGTGTTTGAAACCATTGAATAACCGACAAGAGCTCTTGACTCATTTAGCTATGCATTCGGACAAACAAAACAAAGATTTACGACCTCCACCAAAACTGAAACCTATAACTCCAATTGTCAGTTCTTTCAGAAAATCAATTTCGAATGTGGCAGGGCCTTATATGAATGGGGATCCAGCTCACAATCACATGTGTGATCTTTGTGGAATGATTTATAGGTATAAGCCTAATATGATAAAACATCGAGACCTCTGTTCAACTTTACCAGAACATACTAGAACTTCTTACAGATGTGTTCAGTGCAACATGACTTACCTTGTGttcaagaaattttacattcacgTGTTTTATGAACATAAAAAGCAAGAGATCACTTGCTTCAATTGtcatgaaaaattcacttctgGTGATGAATACCAAGCTCATCATGAAACTCATCGAGAGATAATCAACTCAGAAAAtgcagataaaaatattaacgaaaTATCGCAAAATAGTAGTGCTATGGATGTAGATCCATCTGATTTATCACAGAATTCAACGGGTGTAAGTGGAAAGCCTTTTAACTGTGCTCTCTGTGgtgaaaattttgcaacaaaGGTTGAACTTACTGAACATCGGAATCTTCATCTTAAAGTAAAGATTTATTCATGCGTCATATGTCGCAGTATGTTTAGTAGTTCCGGAGCTTTAGAAGCGCATATGAAAGATCATGGTATTGATGATGCTGCTGAGCAGAATGCTAACAGTTCATGCGTTGAATACGGCCGAGGTCATCGGTCACAAAATTCGTCACTTAATGAGTCTTCTTTATCTGCTTCCTCGGATCCTGGAGGTCGATTCAATCACTGCTATCAATGTGGTAAAAACTTTTCGAATTACGCCAATTTAAAACGACACGAACGAAATTtgcacattaaaataaaacgccgTTGGAGTTGCCACGATTGCAAGCGACGCTTTAAATCTCTAGAAGATTACAATGAGCACTTGAGGTTGGATCACTCTTCAGAACCTAAGGAACAAGAAGCTACCCCTAATATgCCTCCAGCCCAACCTCAAGTATCTACCAGTACTGGTAAGCCAATGATGCAGTGTCCAAAGTGTCCAAAGATGTTTGCGTACCAGGGTAATCTTATTCTACACTGTCAAAATGTGCACAAGGAGAATCACTTTGAACGCACGAAGACAATTGCCCCCGCAATCCGTCGATCAGCTCCTCCTTTGTCACGAATTTTACCTGCTGCTCGTGGCCATTCATGTAACGTGTGCGGCAAGACTTTCCGAGAAGAGCAATCATTGAAGACTCATCGTGGCTGGCATCTGCGAACGAATTACCGACTTAAGTCagataaaaatacaagtttaaatgaaaacttaaTGACTGGACCCGGGTACACGGTCAAGCTGGCAATTCCACCAAAACCAGCAAAAGCTAGGAAATCTTTCCCCAATAATCCTTCACAAAAGCAATTGAATGCCATTGGACCATTACAATGTCAAGTCTGTGACGATCGTTTTTCGGATGTAGCTGAGTTGAGGAAACATCTTTGGGATATTCACTGTGCCCGCAACAAACCCGAGAAGAATTTCGCAAGTGAGTTACAGTGTGAACTATGTACTAACAAATTTGCTGATGAAGAGGCCTtaaaagatcacatgaaatGGCACTCGGAAAATCCCATTCTTAGCTCTGGCAATTCTAACAGTACTAACGTCAACAGTATCATTCAAGAAACAAACTCTATTATTCCTGTAcagcaaaaaaagaatttccatTGTGAAGTTTGCGGTAAATATTATAGCAATCGCAAACTTTTCTTGCGTCATAAAAAACTTCATAAAGCTCTTCCGACGTCATTGATGAACTTCCAgtctttacaaaataaacggCATTACTGTGTTACTTGCCAGAAAAACTTTGCAAATGATGCATCCTTAAAGAGACACAAGGCTTCTCcttgtcatttaaataatgtacgcGCACAAACGGCTATGCCAATGAAAAAGATAACGACTACAGCACTTGTACATCAACCACCTGATGGAGATTTAGATCTAACGACTATAAAAAAGGAGCCTGGTCTTGAAGAGGATCCTCCAAGTCAGCCGGCACCAGCTCCAAAAAAGAGACCCGTCACCTGTCATATTTGCAGAATGATCTTCCCCAATATGAGCGTGTTGTATCAACACAAACAACTCGTACACAAAGTGCATCCTAGTAAAGACAGGCTCGGCGCTCAAAGCACGAATGAATGCGTGCCTCTTATGAGTCCTGAGGGTTTAGTTTGTTGCAACTTATGTGGCAAGCAATTCCCTGGGGTCTCAAATCTCAAACAGCACTTTTCTCACAAACATAAAGTGAAAACTAATACCTTTCCTTGCCCTGCATCAGGCTGTAAACTCGTTTTCAGCAGTGCAAACTCTCTCAAGAGTCACGAGTTGACACACTCAAGTATAATGTTCAATTGTCGCATGTGCGATAAGCACGTCTTTTCAAAAGTTGCCATTACCAAACACATGATGACGATGCATAAGGCAATTTATCAATCTGGAGTTGCTAAAAATACAATGTGGTCTGAAACAGACTTGGCAACGTACAATATTAAGAACTGTCAAAGTACTGCCTGTCCTAAGTGTAAAGTCAAATATCCTAATTTACGAGCGCTGAAAATTCACTacatcaaatttcatgaaaacgtggtgtag
Protein Sequence: MDDVVEISGLENACRLCLTTEQTRSSIFGVPHVSVPFAEKIRACLSIQISANDKLSTLVCATCIKNVNHWHSYKDTCLKSQERLQQWLSKQNIVQPIVTIKEEPVDVEFQDDNVQNSVNDSTNVPPSIENNTVQNAENSSSIANTAGEASSENYVERFDRNHLPPVQVKTEPIDTEDEDDCNVDVESINSGELLINPLAVAVVNSVSSDRIMEADSTQKFKTKKYGRKKFRRGPHTHFRGARLFKKKCIHCKINLHSKYSYQQHMSRYHGIANNVGVNVTSKLPAVAAATKQKSKLTEHTINMEIDDIADIRPEDAEFTKMIKTDPLTPVQKCIIGQLKTFSCYSCKQTFLDRRHTLNHIRQHMPDLRPFTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKVGHEKYFTCNMCLKPLNNRQELLTHLAMHSDKQNKDLRPPPKLKPITPIVSSFRKSISNVAGPYMNGDPAHNHMCDLCGMIYRYKPNMIKHRDLCSTLPEHTRTSYRCVQCNMTYLVFKKFYIHVFYEHKKQEITCFNCHEKFTSGDEYQAHHETHREIINSENADKNINEISQNSSAMDVDPSDLSQNSTGVSGKPFNCALCGENFATKVELTEHRNLHLKVKIYSCVICRSMFSSSGALEAHMKDHGIDDAAEQNANSSCVEYGRGHRSQNSSLNESSLSASSDPGGRFNHCYQCGKNFSNYANLKRHERNLHIKIKRRWSCHDCKRRFKSLEDYNEHLRLDHSSEPKEQEATPNMPPAQPQVSTSTGKPMMQCPKCPKMFAYQGNLILHCQNVHKENHFERTKTIAPAIRRSAPPLSRILPAARGHSCNVCGKTFREEQSLKTHRGWHLRTNYRLKSDKNTSLNENLMTGPGYTVKLAIPPKPAKARKSFPNNPSQKQLNAIGPLQCQVCDDRFSDVAELRKHLWDIHCARNKPEKNFASELQCELCTNKFADEEALKDHMKWHSENPILSSGNSNSTNVNSIIQETNSIIPVQQKKNFHCEVCGKYYSNRKLFLRHKKLHKALPTSLMNFQSLQNKRHYCVTCQKNFANDASLKRHKASPCHLNNVRAQTAMPMKKITTTALVHQPPDGDLDLTTIKKEPGLEEDPPSQPAPAPKKRPVTCHICRMIFPNMSVLYQHKQLVHKVHPSKDRLGAQSTNECVPLMSPEGLVCCNLCGKQFPGVSNLKQHFSHKHKVKTNTFPCPASGCKLVFSSANSLKSHELTHSSIMFNCRMCDKHVFSKVAITKHMMTMHKAIYQSGVAKNTMWSETDLATYNIKNCQSTACPKCKVKYPNLRALKIHYIKFHENVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01380793;
90% Identity: iTF_01380793;
80% Identity: -