Basic Information

Insect: Sycophila texana
Gene Symbol: -
Assembly: GCA_035582955.1
Location: JAWWEN010000001.1:11479304-11482398[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00049 0.056 14.7 4.1 1 23 223 245 223 245 0.97

2 11 1.5e-05 0.0017 19.5 1.5 1 23 251 273 251 273 0.98

3 11 0.0011 0.13 13.6 3.8 1 23 279 302 279 302 0.95

4 11 0.015 1.7 10.0 5.2 1 21 308 328 308 330 0.95

5 11 0.00015 0.017 16.3 1.9 1 23 336 358 336 358 0.99

6 11 9.9e-06 0.0011 20.1 0.3 1 23 364 386 364 386 0.98

7 11 0.00039 0.045 15.0 1.4 1 23 394 417 394 417 0.97

8 11 4.1e-05 0.0048 18.1 2.6 2 23 424 445 423 445 0.97

9 11 0.00015 0.017 16.3 0.3 1 23 451 473 451 473 0.99

10 11 0.0034 0.39 12.1 7.1 1 19 479 497 479 502 0.91

11 11 1.3e-07 1.5e-05 25.9 1.3 1 23 516 538 516 538 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00049	0.056	14.7	4.1	1	23	223	245	223	245	0.97
2	11	1.5e-05	0.0017	19.5	1.5	1	23	251	273	251	273	0.98
3	11	0.0011	0.13	13.6	3.8	1	23	279	302	279	302	0.95
4	11	0.015	1.7	10.0	5.2	1	21	308	328	308	330	0.95
5	11	0.00015	0.017	16.3	1.9	1	23	336	358	336	358	0.99
6	11	9.9e-06	0.0011	20.1	0.3	1	23	364	386	364	386	0.98
7	11	0.00039	0.045	15.0	1.4	1	23	394	417	394	417	0.97
8	11	4.1e-05	0.0048	18.1	2.6	2	23	424	445	423	445	0.97
9	11	0.00015	0.017	16.3	0.3	1	23	451	473	451	473	0.99
10	11	0.0034	0.39	12.1	7.1	1	19	479	497	479	502	0.91
11	11	1.3e-07	1.5e-05	25.9	1.3	1	23	516	538	516	538	0.98

Sequence Information

Coding Sequence: ATGTCAAACGTAACAACAATAAAGTTGGAAGGAAATCAGGAGTCTGTAACTGAAATACAGACTTATCTGGAATCTTTTAATAAGGAAATTGAAGGTGGTCAAGGGGAACAGTTACAGCATGTTCAATtacaaCAAGTAGAAGGATTAACAGGAGAAGATGGAGGCACATATTTTGTTGATCAGGCTGGCCAGTATTATTATCAAGCTAGTGGAGACGATACACCTGTTTTAACTCAAGTGCAAATACAGGAGGTAAGTGAAGCAGATGGGAATATTGATGAGGGTTCACAAGAAGGACAGTACCAGGAAATTGAAGATCTTGAACATGTTAATTCAGATAGTcaggtTCAAACAACTGATGGTATTGGGAACCAGATGGTTTTGAATTCTGGTGATGCTTATCAAACTGTAACAATAGTGCCATCGGACTCTAATCCTGGAGAAGTTAGCTATGTATTAATTGTGCAGCAACCTGAAGCTGATACAAAGGGAGAGAGTAAGaccgaaaatgaaaatggtgAAGGTGAAGAGGGTGAACAGGACTTAACTGTATATGATTTTGAAGATAATGAAGATAATGAAGCCGCTGTTGAATCTGAAGTTGAAGATGATAAGACGAAAATCATCAAGTTTATTCCCAAGAAATCACAGACAGTTACACAGGCTCACAtgtgtaattattgtaattacacAAGTCCTAAACGTTATCTGTTATCTCGGCACATGAAATCTCATTCAGAAGAGAGGCCTCACAAATGCAGCGTCTGTGAAAGAGGTTTTAAAACTCTAGCTTCATTGCAGAATCATGTCAATACCCATACTGGGACCAAACCCCAtcactgtaaattttgtgATAGTGCTTTTACAACTTCTGgTGAACTTGTTAGACACGTGCGATACAGACACACTCATGAAAAACCACATAAATGTCATGAATGTGATTATGCCTCTGTTGAATTATCTAAGTTAAAGAGACACATTAGATGTCATACTGGAGAACGGCCATACCAAtgTCCACATTGTACATACGCAAGTCCAGACACTTTTAAGTTAAAGAGACATTTACGCATACATACTGGTGAAAAGCCGTACGAGTGTGATATTTGTAATGCAAGATTTACTCAGTCTAATAGTTTAAAGGCCCATAAACTTGTCCATAACGttggaGATAAACCCGTGTTCCAGTGTGAACTTTGTCCTACAACGTGTGGTAGGAAAACGGATCTGAGGATtcatgtacaaaaattacacacCTCTGATAAaccattaaaatgtaaaagatgCGGTAAAACATTCCCTGATAGGTACAGTTACAAATTGCACAGCAAAACACATGAAGGAGAGAAGTGTTATAAATGTGATTTATGTCCTTATGCTTCGATATCGGCTCGCCATTTAGAAAGCCACATGCTCATTCACACGGATCAGAAACCATATCAATGTGATCATTGTTACCAGTCCTTCAGACAAAaacaacttttaaaaagacatTGTAATCTTTATCACAATCCTTCTTATGTTCCACCTCCACCTCAGGAGAAAACCCATCAATGTCCAGAATGTGAAAGAGCATTTAGgCACAAAGGAAATCTTATTCGCCATATGGCTGTTCATGACCCAGAATCTTCCCTGCAAGAGAAACAGCAAGCTCTGAAGATAGGAAGGCAAAAGAAGATTCAGATTATTGATGGCCAAAGGGTTGAAGTTATGACTgGTGATATAGCTTCTAAACTTAAAGGTTTCAATGAAGAAGatgaggaagaagaagaagaggaggaggaagaggaggacgACATGATGGCGGTTGAAGGAAGTGATGGACAGCAATACGTTGTTCTTGAAGTCATTCAGCTACCAGATAACCAATCTTCAGAAcagatggCTGTTGTAGCAAGTGAAGACGGAGATTTAGTAATGCAGGATCCTCTTAGTCAAGAAAGTGGAATTGTCACGGAAGCTGGAGATGAATTGATAGAGCAAGATGCTGAGCAAATTGTTGGTACCTTGAAACTTGAAGAAGTTCCAATCACTAAGAACACACATGCTAGTGATCCAAAACTTCAAAAAGATATGGAAACATGTTTTGGATTTGATGAAgaggaggaagaggaagaaggAGAAAGTGGCGACATACCAATACTGCAGGGCATCTCGTAA
Protein Sequence: MSNVTTIKLEGNQESVTEIQTYLESFNKEIEGGQGEQLQHVQLQQVEGLTGEDGGTYFVDQAGQYYYQASGDDTPVLTQVQIQEVSEADGNIDEGSQEGQYQEIEDLEHVNSDSQVQTTDGIGNQMVLNSGDAYQTVTIVPSDSNPGEVSYVLIVQQPEADTKGESKTENENGEGEEGEQDLTVYDFEDNEDNEAAVESEVEDDKTKIIKFIPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCDSAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICNARFTQSNSLKAHKLVHNVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCYQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERAFRHKGNLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGDIASKLKGFNEEDEEEEEEEEEEEDDMMAVEGSDGQQYVVLEVIQLPDNQSSEQMAVVASEDGDLVMQDPLSQESGIVTEAGDELIEQDAEQIVGTLKLEEVPITKNTHASDPKLQKDMETCFGFDEEEEEEEGESGDIPILQGIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730251;
90% Identity: iTF_01468260;
80% Identity: -