Stex012356.2
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010005347.1:706-3525[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1 1.2e+02 4.2 0.0 2 21 120 138 119 139 0.88 2 14 0.00057 0.066 14.5 2.7 1 20 145 164 145 167 0.96 3 14 0.0018 0.21 12.9 1.0 1 23 173 196 173 196 0.93 4 14 7.2e-06 0.00083 20.5 0.9 1 23 202 224 202 224 0.98 5 14 0.00012 0.014 16.6 0.3 1 23 366 388 366 388 0.97 6 14 0.007 0.8 11.1 0.1 2 20 398 416 397 418 0.93 7 14 0.00038 0.043 15.1 2.6 1 20 440 459 440 462 0.92 8 14 0.0015 0.18 13.2 0.3 1 23 467 490 467 490 0.95 9 14 1.8e-06 0.00021 22.4 0.3 1 23 496 518 496 518 0.98 10 14 0.0026 0.3 12.4 6.3 1 23 525 547 525 547 0.98 11 14 0.00044 0.051 14.9 0.4 3 23 555 575 553 575 0.97 12 14 0.0005 0.058 14.7 0.2 1 23 581 604 581 604 0.96 13 14 0.02 2.3 9.7 1.4 1 23 618 640 618 640 0.97 14 14 0.017 2 9.8 0.0 2 23 883 904 882 904 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCAAATGATAATGagcaatatttaacatttcctTTAGACAATGTTCATGAAGGTCTTCAAAACAACATATCTCACGAAGAAATATGTGAACCCATCGATGATTGTATACTGCCAGACAGTCTAACCGAGGTCACCATTGGTGAGGTTAATCAAGATATTGAAGAAACTCAAGTAGCTGTAGAAATTGTAACTGAAAATTCAGAGGGTGAAGAAGAACAAAGTTCTGTTGTGTAtcctatttatataaaaaaagaaacttcaaaGCAATTTAATACTGGAGATGAATCAATGGCAGTGGAAGCTTTACGTCAATTAGGTGGCATGTATCCTTGTTCTGAAGATAAGAAAGTTGTTTGTTCTAACTGTACTAATACGTTTTCACAAATAGAGTTAGCAGAGCATCAAATTACGTGCATGTCTAAAAAACACACTTGCAATACATGTGGTGAaaactttgaaagaaaaatagatttaaacaATCATATGGTTTGTCATCAAGTAGACAGACCTCATGCTTGTAGAACATGTGGGAATTTGTTtagatcaaaaattaatttacaaaatcataTGGCGCAGGTTCATCAGGTAGAGCGACCTCATAAATGTACAGTCTGTGGAGCAGATTTTCAACGACCATCTAGTTTATCTAACCACATGAAAATACATAGTTATGTAGCTGGAAGGGCTTTAATGCAAGCTCAAACTAGTAATATAACAGAGGATTCAGAAACtttaagaaatgtttttgGCACTCAAGAAACTCCAATTTTGGCAGCAACTATTCAAAATCTTGAAATACCACAAGTTCAATGGGCTGTGcaaacttataattttactactgATCAAACTAACATTGATGGTCTTGTTAATCAGAATGATAAAATAGATCCTTTGCAAGAATTTACTGTTTTGCCTAATGGTGAAGTAgcacaatttcaatttaatccaCAAAATACGGAAGGTCAGCAATAtagtttaactttaaattcttttaataattctaatactTTGATAAAAGTAGAAGctgctaattttaataatgaaaataaaaagacctACATTGAAATagatttacaagaaaataaagttcatACTTGCAGTCAGTGTGGTGTCAGTTTTGCTAGAGCAGCATCTTTAagtttacatgaaaaaatccataagaaaaatgaatgggTTAGTCCAGTAGAATGCGAATATTGTGATAAACAATTCCAGGATGCTAATTTTTTAGCTTCTCACCAAACGTCTTGTGCACGAAAGTTAATACAAAGCAGTAGAGAACCAAATGCATCTAATGCAAAATGGGGAAAACATGCTTGTTCAGAATGCGGAAAGAAATTTACCACAAAACAAAAGATGTTCAGGCATCAATGGATTCATAGGAAAAAAACTCACTCTTGTGAAGTGTGTGGTGTTCAGTTTGAAAAACAATCAGAACTTGATGAGCATAGATTATCAGCTCATCCAGGTGATTCTCAATTTACTTGCAGTGAATGTGGTAAAAGTTTTGTATCTCGACAAGGACTGTGGGAACATGGTAGAACACATGCTGGGAGTCCAGCTTACTTCCATTGTGATACTTGTTCAAAAACCTTTTCTTCAAGGCAAGGATATTTAATACATCATAGAACTCACACAGGAGAGCGTCCTTATGGTTGCAAGTTTTGCTGGAAAGCATTTCGTGATGGTGGAACTTTAAGAAAACATGAACGGATACATACCGGAGAAAGGCCTCATGTATGTCCATTGTGCTCAAGAGCATTCAATCAAAAAGTAGTCTTACGTGAACATGTTCGATGGGTTCATGCAGctggaaaaaatgaaaccgAATCTACTGGCCCTCCATTTTCATGTCCTTTATGTGGATGTTTAACTCAAGATAGAGATGAGTTATGTGCTCATATTGTTAAGCATTCTGATCAAATGATAGCTGAAGCAAAGgcaaaaagtaataatgagGTTGCAAAAACTAAACAACAAAGAAAGAGAAGTAAaacatcagaaaaaaaaagaaaaacaccaCAACCAAGAGGAGTAAGATTAATTTCGGCTTCAGAACAAAATGAAGCTTTGCTTTCAATAGCGGAACAAGTAGACAATAGTCCAGAAATACAAGATACATATTTAGTAGTCAAAAACGATTACAATGATGCACTATGCATAAAAACATATGCAAGACCAAACAGCATTTCTGAAATAGATGGACAAAATGAATCTATTAATGTAATAACAATTGCTAAGCCTtctgatattaaaaatgataatgaaaCAGTTGATATTGTAAACAGACAAGCTAATGTTAATACTATGCATTTGATACCTATTACTACCTCTGGTGAAACAGTTCATCTTATCTCTACTAACAAACCAAATACTTTGCATTTAATATCTAaacagaatgaaaatttacctGTTTTAACATTACCTAATCCACAAACTAATGACAACTTTTCAAACCAAATACAAGAGGAAAGTAATAATCTAGAATCGTCGTCAAACATTTTGACACAACATGAGCAGTGTACAGAAATTGTACAAGCTGAAACTATGATAGTTCAATctgtttctatgaaaattGTCAATGACCAAACCAAAactcttataaataaagaagaaagtgATGATGAAAGTGAAGAATTAGTTTGTGGTATTTGTGGAAATGATTTTgatgataaaaatgtattaatggaacatgtgaaaattcacatataa
- Protein Sequence
- MESNDNEQYLTFPLDNVHEGLQNNISHEEICEPIDDCILPDSLTEVTIGEVNQDIEETQVAVEIVTENSEGEEEQSSVVYPIYIKKETSKQFNTGDESMAVEALRQLGGMYPCSEDKKVVCSNCTNTFSQIELAEHQITCMSKKHTCNTCGENFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKINLQNHMAQVHQVERPHKCTVCGADFQRPSSLSNHMKIHSYVAGRALMQAQTSNITEDSETLRNVFGTQETPILAATIQNLEIPQVQWAVQTYNFTTDQTNIDGLVNQNDKIDPLQEFTVLPNGEVAQFQFNPQNTEGQQYSLTLNSFNNSNTLIKVEAANFNNENKKTYIEIDLQENKVHTCSQCGVSFARAASLSLHEKIHKKNEWVSPVECEYCDKQFQDANFLASHQTSCARKLIQSSREPNASNAKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGVQFEKQSELDEHRLSAHPGDSQFTCSECGKSFVSRQGLWEHGRTHAGSPAYFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETESTGPPFSCPLCGCLTQDRDELCAHIVKHSDQMIAEAKAKSNNEVAKTKQQRKRSKTSEKKRKTPQPRGVRLISASEQNEALLSIAEQVDNSPEIQDTYLVVKNDYNDALCIKTYARPNSISEIDGQNESINVITIAKPSDIKNDNETVDIVNRQANVNTMHLIPITTSGETVHLISTNKPNTLHLISKQNENLPVLTLPNPQTNDNFSNQIQEESNNLESSSNILTQHEQCTEIVQAETMIVQSVSMKIVNDQTKTLINKEESDDESEELVCGICGNDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00714593; iTF_01380781; iTF_00713119;
- 90% Identity
- iTF_00713119;
- 80% Identity
- -