Basic Information

Insect: Sycophila texana
Gene Symbol: -
Assembly: GCA_035582955.1
Location: JAWWEN010000009.1:1133722-1137531[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.6e-06 0.00041 21.4 1.4 1 23 147 169 147 169 0.98

2 15 7.8e-05 0.0089 17.2 0.2 3 23 177 197 176 197 0.99

3 15 0.00044 0.051 14.9 0.0 1 23 283 305 283 305 0.98

4 15 0.01 1.2 10.6 0.3 1 23 311 334 311 334 0.97

5 15 0.00023 0.027 15.7 1.9 1 23 361 383 361 383 0.97

6 15 2.1 2.4e+02 3.3 0.0 1 23 398 420 398 420 0.86

7 15 0.053 6.2 8.3 0.3 2 23 428 450 428 450 0.95

8 15 0.012 1.3 10.4 2.2 2 19 458 475 458 479 0.94

9 15 0.00023 0.027 15.7 3.5 3 23 487 507 485 507 0.97

10 15 0.017 2 9.9 0.1 3 23 514 534 513 534 0.97

11 15 9.9e-06 0.0011 20.1 0.4 1 23 543 565 543 565 0.98

12 15 0.0043 0.49 11.8 0.2 3 23 573 593 571 593 0.97

13 15 0.0038 0.44 11.9 0.2 3 23 601 621 599 622 0.94

14 15 0.017 2 9.8 0.0 1 23 636 658 636 658 0.95

15 15 0.033 3.8 9.0 0.0 1 20 1080 1099 1080 1102 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.6e-06	0.00041	21.4	1.4	1	23	147	169	147	169	0.98
2	15	7.8e-05	0.0089	17.2	0.2	3	23	177	197	176	197	0.99
3	15	0.00044	0.051	14.9	0.0	1	23	283	305	283	305	0.98
4	15	0.01	1.2	10.6	0.3	1	23	311	334	311	334	0.97
5	15	0.00023	0.027	15.7	1.9	1	23	361	383	361	383	0.97
6	15	2.1	2.4e+02	3.3	0.0	1	23	398	420	398	420	0.86
7	15	0.053	6.2	8.3	0.3	2	23	428	450	428	450	0.95
8	15	0.012	1.3	10.4	2.2	2	19	458	475	458	479	0.94
9	15	0.00023	0.027	15.7	3.5	3	23	487	507	485	507	0.97
10	15	0.017	2	9.9	0.1	3	23	514	534	513	534	0.97
11	15	9.9e-06	0.0011	20.1	0.4	1	23	543	565	543	565	0.98
12	15	0.0043	0.49	11.8	0.2	3	23	573	593	571	593	0.97
13	15	0.0038	0.44	11.9	0.2	3	23	601	621	599	622	0.94
14	15	0.017	2	9.8	0.0	1	23	636	658	636	658	0.95
15	15	0.033	3.8	9.0	0.0	1	20	1080	1099	1080	1102	0.94

Sequence Information

Coding Sequence: ATGGATGACGGTGGTGATTTGACCCTACAATGGGTGGAGGAGGTCGGCAACGTTATTCACGAGGAAGTAATATGTGGCCTGGAGGCAGAACTGGATGCTCCCGTGGAGGAGGTGGTGGGAGCTTGCGAGGAGGTCACTGTAGAAGAAACAGTGGAGTCAGTTCCAGAAGATACCACACCTATAACGGACACAGAGATCCTAATGGTGCCACAAACAAGTGACATGGAGTCAATATATATTGTACCTCAAGACCAGGGACACGATTACCTTAATATTCAAGTCACTGAAGAAGTGATTACAGACAATTGGGATAGATCTGGTCCAGATGATGGAATGGAAGTTCCAGAAACAAAGGTTTCACAAGATAATTTATTGGAATATGATGATATGGAAATACCCTTGCCAATTGATCAAGATTCATATACAAATACAAGACCATATCCTTGTGATTTTTGCAGTAAACGATTCAGGAAAAAAGCAAATCTTATGAATCACATGGTTACTCATCAAACAGAGCGCCCTCATGGTTGTAATTTATGTGGTGCTCGTTATGTAAGAAAATCTGATTTAatgaatcatttaaaaattcatgctTATGCTCCATCTCGAGATGGTTTGGAAGATGATTTAGAAGATCCTTTGGCTACAGAAGAGGAGGAAAATCATCCAGTTAAAGGTCGGCGGAAGAAGGTTCAAACCAATGTTCCTAGAAAACGTAAAGCTCCTGCAGGTAATAAACGAACTAATGTGGAAGAAGGAGCAAAGATTGATATGAGCAAATGGACAGAACAACTGACAGCAGCTGATCAGATGCCAAGGTGGCCAGTTACAGATGCTACAAAACCATATGTTTGCCAATTTTGTGGAGTTGGCTTTGCAAGAGAAAAGGCTCTAGCATCACATGCTCGCATTCATGGTGGTGATAGTCCCTTTGAATGTACATCTTGTAATGAAATGTTTTGGGATGTTAATACCCTTCAGGAACATATGAGAGTTAAACATGGTATTGGGATAGCTCAATCTGAtcaagaagaaaatgaaaatgaatctACATACGCGGGAGATGAAAGGTTTGGTGAATTTTTCTGTGATACATGTGGAGTACCCTTCCACAGATTAGATCTTCTAAAGCGTCACAGAAAgatTCATATTAAACAAGAAATTGAAACAATGGAAGGCTCCAGTCAACATCACGTTTGCAATGTGTGTGGTGAATGGTTTGAAGAAGCATTAGCGTTATTAGCTCATGCTGAATTGCACGCcagTAGGTCACCTAGTCGCAGGTGCTTATTGTGCGGCGAGAGGTGTCGTGACGATGCTGAACTCGCCGAGCACGTTCGTGAAATGCACGCCGAGGATGCACCTCCAAATACTTGTGTCTTATGTGGAAAGACTTGTAAAGATAAGAgaagtttattaaaacattcgTGGATACACAATACCGATAAAACTTTTGGTTGTACCAAGTGTGGAAAACGTTTCCATAGTAAAGCAAGACTAAGAAGacaCATGGTATCTCATCGTAATAAAATGGTTGCATGCGACGAGTGTGGTGAGGAGTTCCCTGATGGCCGTGCTTTGGTCAGTCATCGACACTCGCATAACAAAGAATTAGGCGGTCGTACGTTCCCCTGTAGGGAATGCGGTAAAACTTTCGGTAGTCGCAGCTCCCAACAAATACATATCCGTATTCATACCGGTGAGAGGCCCTACGGATGCCGGTTTTGCTGGAAGGCCTTCGCCGACGGTGGTACACTCCGGAAGCATGAGAGAATACACACAGGAGAAAAGCCTTATGGGTGTGCCATATGTCCCCGTGCTTTTAATCAAAGAGTCGTCCTACGTGAGCACGTTAGAGCTCACCATTCAGGTCCTGATCCAAAGTGTCATAACAGTTTGACACCCTATATGTGCAAAGTATGCGGTGATACGCTACCAACATCAGACGAGCTTGTAGCTCACATAGTTGCTCACTGTGACGAGAACACTGCGATGCGCCGACAACCGCAGTCCGGTCCCAGAAAGTACAAGCGGAGACGTAAGCTGAAGCATGACAGTACTACACTTGGATCTCGTCTCAACGAATTTGAGATGCTCGACGGCCCGTCAGATTCTGATGAGAATACGAAGCGAAAGCTCGGCAAAAAAACCAAACAACAACAACGATCTAATGTCGAAGAAGGTTATCAAAACGTACTCAAGAGCTTTGAAAGCTCTCTGCAAAACATCAATTCAATTGTGAGTAACTCCAAGACGTATCCTGCGAAGACGAAAACACCGAAAAAGAAGCCGAAGAAAGATGAGAAAAAAGCCGGTGCTTCGGGAGTGGCTAGCGGTATTGAAGCGCCAACTTCTAATCACCCAGGCAGGCCAAAGATGATACATACGCAAAAAACGCGGGTACCCGTAGAGATGGGCACTGACGGTGTGAAAAAGGGCCAAAAGACGAAGACAATGGTCACCAGAACGCCCAAAGTTATGCCGAAtgagcagcagcaacaaccgctgccgccgccgcatCCGATATATCATCAGAAGGTTGTAACGGGTGGTGAAAGAAATCGTCCACGAACAAAGAATGTGAGCTATCACGTGGAAGGCAGGCAACAATTCATACCCGCCACTTTCCCCAAGCCAAAGGATGACAATGCTCCGTCTGAGCCAACTGCCATAGAGACGGTCAACATCAAGATTGAGCCTGGATTGCATAAACTAGGAACTGCGCAGAACCATGCAACCAATAACAACGGCAACCTTCTGCAactcaaagaagaaaaagctaCTCCGAAAAAACGGGGACCTGTCAAGAGGGCCAAAAGAAGAACGACAGGTGTTGTAGCGAAAAAATCCAAAGAGAAAGTAGTGCCAAGCACACCCGAGATGGCTAACAACAACAATTTCACGGAAGGAATGATCTCGATGGATCATCATCCTCAACAGCAAATGCATCATCAACCGGAAGAAGTGCAACCGACTCACCTGTTTGAATCCATTGTGGATGGAAACAACCTCGAGGTGGCATTCGAGGCGAACGTCGTCTCCGAGCAGGACATGGTGCAAGAATCGATACTCCCGGATCTCGACAAAGTTAATCATATCGAGGCAATGAGCTCAGCCGGGAACATGAAACTCAGTGTAAAAGTCGAATCGGCACCCGACAGCATTCTCGACGTTCATAGCCTGATAGGGTCAGTTGAGGAAACAGTGCCAGAGACCATTATACCGGACGCTGTCGAGTACACCTGCGAAATGTGTGCTGCGGTGTTCCCGACTCGCGCCGAATTACTGGTGCATGTGCCCATACACATTTGA
Protein Sequence: MDDGGDLTLQWVEEVGNVIHEEVICGLEAELDAPVEEVVGACEEVTVEETVESVPEDTTPITDTEILMVPQTSDMESIYIVPQDQGHDYLNIQVTEEVITDNWDRSGPDDGMEVPETKVSQDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSKRFRKKANLMNHMVTHQTERPHGCNLCGARYVRKSDLMNHLKIHAYAPSRDGLEDDLEDPLATEEEENHPVKGRRKKVQTNVPRKRKAPAGNKRTNVEEGAKIDMSKWTEQLTAADQMPRWPVTDATKPYVCQFCGVGFAREKALASHARIHGGDSPFECTSCNEMFWDVNTLQEHMRVKHGIGIAQSDQEENENESTYAGDERFGEFFCDTCGVPFHRLDLLKRHRKIHIKQEIETMEGSSQHHVCNVCGEWFEEALALLAHAELHASRSPSRRCLLCGERCRDDAELAEHVREMHAEDAPPNTCVLCGKTCKDKRSLLKHSWIHNTDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKELGGRTFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCHNSLTPYMCKVCGDTLPTSDELVAHIVAHCDENTAMRRQPQSGPRKYKRRRKLKHDSTTLGSRLNEFEMLDGPSDSDENTKRKLGKKTKQQQRSNVEEGYQNVLKSFESSLQNINSIVSNSKTYPAKTKTPKKKPKKDEKKAGASGVASGIEAPTSNHPGRPKMIHTQKTRVPVEMGTDGVKKGQKTKTMVTRTPKVMPNEQQQQPLPPPHPIYHQKVVTGGERNRPRTKNVSYHVEGRQQFIPATFPKPKDDNAPSEPTAIETVNIKIEPGLHKLGTAQNHATNNNGNLLQLKEEKATPKKRGPVKRAKRRTTGVVAKKSKEKVVPSTPEMANNNNFTEGMISMDHHPQQQMHHQPEEVQPTHLFESIVDGNNLEVAFEANVVSEQDMVQESILPDLDKVNHIEAMSSAGNMKLSVKVESAPDSILDVHSLIGSVEETVPETIIPDAVEYTCEMCAAVFPTRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01219230;
90% Identity: iTF_00713824;
80% Identity: -