Stex003751.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010000020.1:1914832-1918903[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0026 0.29 12.5 1.2 7 23 30 46 30 46 0.97 2 11 2.6e-05 0.003 18.7 6.7 1 23 52 74 52 74 0.97 3 11 8.2e-06 0.00094 20.3 5.8 1 23 80 102 80 102 0.98 4 11 2.2e-07 2.5e-05 25.3 2.9 1 23 108 130 108 130 0.98 5 11 3.2e-06 0.00037 21.6 7.8 1 23 136 158 136 158 0.98 6 11 1e-05 0.0012 20.0 9.1 1 23 164 186 164 186 0.98 7 11 1.3e-05 0.0015 19.6 7.5 1 23 192 214 192 214 0.98 8 11 0.00038 0.044 15.1 8.8 1 21 220 240 220 242 0.94 9 11 4.9e-06 0.00056 21.0 0.4 1 23 248 270 248 270 0.98 10 11 0.012 1.3 10.4 4.5 1 23 280 302 280 302 0.98 11 11 1.9e-07 2.2e-05 25.5 1.3 1 23 308 330 308 330 0.97
Sequence Information
- Coding Sequence
- ATGTTCCAGCCGAGTTTCCGGGCCCTCAGCGCcgagcagcaacagcagcaccGTGATGCCGTCGCCTGCTACCTCGTCAACCTGAGTGGCAAATCGTTCACGCGCAAAGAGCACTTCACGAATCACATAATGTGGCACACGGGCGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACGCGCAAGGAGCATCTGCTGAACCACGTCCGACAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCCTTCCGCTGCCAGTACTGTCCGAAAGCGTTTACGCGGAAGGACCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCCTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAGTCGCCCCACCGCTGCCACTTCTGCTCCAAGTCCTTCACCCGCAAGGAACACTTGACGAATCACGTGCGCATACACACCGGCGAGTCGCCCCATCGCTGCGAGTTCTGCCAGCGCACCTTCACGCGCAAGGAACACCTGAATAATCATCTCAGGCAGCACACCGGCGACTCGTCGCACTGCTGCAACGTATGCTCCAAGCCTTTCACGCGCAAGGAGCACCTGATCAATCACATGCGCTGCCACACGGGCGAGCGTCCGTTCGTCTGTACCGAGTGCGGCAAGAGTTTTCCGCTGAAGGGTAATCTGCTCTTCCACATGCGCTCGCATAACAAGGGCAGCCAGGCCGAGCGGCCGTTCCGCTGCGACCTCTGCCCCAAGGACTTCATGTGCAAGGGCCACTTGGTGTCGCACCGGCGCTCCCATTCGGACGAGCGACCCCACAGTTGTCCCGACTGTGGCAAAACCTTCGTTGAGAAGGGCAACATGCTGCGCCACCTGCGTAAGCACGCGGCAGAGGGTCCACCTACGCAGGTCAGCAGCGCAGCCTCCGCCCTGGTCGGGCAGCAGGCAGCCGCTGCGGCTGCGGCTGGCGCGCCCAGCTTGCCTATAcccacggcggcggcggccgcggccgcGGTCCTCGTTGGCCATCCCCTCGCACCGCCACCTGCCCCCGCAGTCGGCCTGCCTCAGCACACAGTCGTCGTGCCCACCCCGCCCGGCGTCCTCGCCTCTTACTGA
- Protein Sequence
- MFQPSFRALSAEQQQQHRDAVACYLVNLSGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSSAASALVGQQAAAAAAAGAPSLPIPTAAAAAAAVLVGHPLAPPPAPAVGLPQHTVVVPTPPGVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00962665;
- 90% Identity
- iTF_01268447;
- 80% Identity
- -