Basic Information

Insect: Sycophila texana
Gene Symbol: -
Assembly: GCA_035582955.1
Location: JAWWEN010000009.1:7225636-7228698[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0081 0.94 10.9 1.1 1 23 272 294 272 294 0.95

2 12 3.2e-05 0.0037 18.4 1.2 1 23 302 324 302 324 0.98

3 12 1.2e-05 0.0013 19.8 0.7 2 23 332 353 331 353 0.97

4 12 0.0017 0.2 13.0 1.8 1 23 359 381 359 381 0.98

5 12 2.4e-05 0.0028 18.8 2.7 1 23 388 410 388 410 0.98

6 12 1.6e-05 0.0018 19.4 0.6 1 23 416 438 416 438 0.95

7 12 1.3e-05 0.0015 19.6 0.1 1 23 444 466 444 466 0.98

8 12 7.5e-07 8.6e-05 23.6 1.2 1 23 472 495 472 495 0.96

9 12 5.7e-06 0.00066 20.8 0.5 1 23 501 524 501 524 0.96

10 12 1.5e-05 0.0017 19.5 1.8 1 23 530 552 530 552 0.99

11 12 9.7e-05 0.011 16.9 0.4 1 23 558 580 558 580 0.94

12 12 0.00039 0.045 15.0 0.2 1 23 586 610 586 610 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0081	0.94	10.9	1.1	1	23	272	294	272	294	0.95
2	12	3.2e-05	0.0037	18.4	1.2	1	23	302	324	302	324	0.98
3	12	1.2e-05	0.0013	19.8	0.7	2	23	332	353	331	353	0.97
4	12	0.0017	0.2	13.0	1.8	1	23	359	381	359	381	0.98
5	12	2.4e-05	0.0028	18.8	2.7	1	23	388	410	388	410	0.98
6	12	1.6e-05	0.0018	19.4	0.6	1	23	416	438	416	438	0.95
7	12	1.3e-05	0.0015	19.6	0.1	1	23	444	466	444	466	0.98
8	12	7.5e-07	8.6e-05	23.6	1.2	1	23	472	495	472	495	0.96
9	12	5.7e-06	0.00066	20.8	0.5	1	23	501	524	501	524	0.96
10	12	1.5e-05	0.0017	19.5	1.8	1	23	530	552	530	552	0.99
11	12	9.7e-05	0.011	16.9	0.4	1	23	558	580	558	580	0.94
12	12	0.00039	0.045	15.0	0.2	1	23	586	610	586	610	0.94

Sequence Information

Coding Sequence: ATGACAGCGGACCCAGAGAAAGATTCTACGCATTGCCTACTTTGCGACTGCAAAGTAGGGGTGTCAACAAGAAACAGTGTTCCTATATTTGGCGATAATGCTGTAACGAACTCTGATAAACAAATCACTGCTGTACTTTGTTCTGtaatacaaacatttaaaaaagaaaatgcgcactcttcaataatttgtaaaaagtgtTATAAGCTTATTAAcgaggCTGATGAACTGCAGTCTAAATTGACAGTAATTAAAACAGAgatatgtaatttatataaaaaatcttctgcaaaattttctgaagcAAGTTTGAATGAagctgaaaatgaaaatggagAAGACTATAATGACCATGATTATGTTGATAATATTGAAAGCATAGAAGTAGTACCTATATTAAAAAGTGACAAAGTAAGGGAAACTAagagaaaaactaaaaaagtatcaatttCTGACACACCTTCTGATATTCAAactAAAATAAGTGCCAATGAAGCAGGTAAACTTGAAGCATTTGAATCAGCTGAAAAGATTGAAGATCAAGATGAACAATCAAATTATTCTGCTGGAAATGATGATAATCAAGATGCTATTTCAGATTCACCTGAAAATGAATCGCAGATTGAAGAAGTACTTGTCGAACAGAAAAGTGGTGCGAAAAAggttaaaacgaaaaaagtgGAGCCTGTTGATgagtttGCTACAAGAGATGGTAACAGTTACACATGTGCAGTTTGCACAGGTGATAATAACGAGAGCAGAGATGCTAAAGGTATCATTGCTCATTTAAAAGAGGAACACGATTTACGTCTCTACATCTGTGACATTTGTGGAGATTACTTTAGGAAAAGAACAGATTTATCACATCATTTGGATGATCACGTAGCTAAAGAGGAAGGAGATTTTCAATGCGAAGTATGCAATAGAATATTTAGTAACTTGCGGCTATTTCGTATTCACAAGCGCATTCATTATCCTCAAGTGAAATCTTGGACATGTGAAACTTGCGGTAAGCGATACAGTTCAAAGAATTTACTTGAAGAACACACAAATACACATACTGGAAACCGGCCATATATTTGTGAAGTGTGTAATAAAGATTTTGCATCAAAATATACTCATCGAGCACATGTTAAAACTCACGAAGTTAGACCTAGACCATTCGAGTGCACTCAGTGCAATAAAACTTTCCTTAGTCAACAAAATTTGACTCAACATCTAAAAACACATAATGGAGTGAAGGAGTATATTTGTCATCAATGtggCAAAGCATTTGGTTCTGCACACAATCTTGAAGTACACAATATTGTTCATACTGGACACAAGCCATACATTTGCCGTGTTTGCGGTAAAGCATTTGCTAGGAAAGCAGAGATTCGTGATCATGAAAGAACGCATACAGGCGAAAAACCTTATCAATGCGAATTTTGTGGAGCTACCTTTAGTCaaaggtcaaatttacaatCTCATAAGCGAGCGACGCATTATAATGATAAACGATATAAATGTGATGAATGTGGTAAaggttttaaaagaagaagattGCTGGATTATCATATTAAAGCTGCTCACACTGGTGAGCGTCCTTACAAATGCGAAACTTGTGCAGCCACTTTTGTTTATCCAGAGCACTTTAAGAAGCATATGCGAATTCACACAGGAGAGAAACCTTATTTATGCgaggTTTGTGGAAAAGCCTTCAACAGTAGAGATAATCGAAATGCACATAGATTTATCCATAGTGATAAGAAGCCGTATGAATGTTTAGTTTGTGGAATGGGATTTATGCGAAAACCACTGCTATATACACATATGCAAACGCAAGGTCATTTGAACGATACGATCGTTGTAAATCAACCAAGACTGACTACAGAAGATGACGTTCTCATTGAAGATAACAAAGTTCATTTAGTTATGGAGGGCACAACAAatgaactgaaCGAAAATACACAACTAATTGTTACTGAACTTAAAGAACATGTAATTATACAAGAAGGAGATCAGCAAAACGTTATCAGTCTTGCAGAAGGTGATATGGGTGGTCAAGAAATGAATCAACTTGTCGTCGACGGAGAcatgtCTTTCGAGGAATCCGAAGTGATGGAGTGTAAAACTGAGGTTGTGGATGAAGTTGAAGAGGTTTATGGTTACCAGGATGAGGAAGGCAATACCATTGTTTTACCTCCAGGAACTGATATCAAAGAGATCATAGGGGATGGAAACAAAACGTTGCGTTTGGTCCAAATTCGATTATCAGAAGACAATACGGAGGAAGGCAGAAGCTGGTTGAGCCTAGTACAATGA
Protein Sequence: MTADPEKDSTHCLLCDCKVGVSTRNSVPIFGDNAVTNSDKQITAVLCSVIQTFKKENAHSSIICKKCYKLINEADELQSKLTVIKTEICNLYKKSSAKFSEASLNEAENENGEDYNDHDYVDNIESIEVVPILKSDKVRETKRKTKKVSISDTPSDIQTKISANEAGKLEAFESAEKIEDQDEQSNYSAGNDDNQDAISDSPENESQIEEVLVEQKSGAKKVKTKKVEPVDEFATRDGNSYTCAVCTGDNNESRDAKGIIAHLKEEHDLRLYICDICGDYFRKRTDLSHHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWTCETCGKRYSSKNLLEEHTNTHTGNRPYICEVCNKDFASKYTHRAHVKTHEVRPRPFECTQCNKTFLSQQNLTQHLKTHNGVKEYICHQCGKAFGSAHNLEVHNIVHTGHKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRRRLLDYHIKAAHTGERPYKCETCAATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEDDVLIEDNKVHLVMEGTTNELNENTQLIVTELKEHVIIQEGDQQNVISLAEGDMGGQEMNQLVVDGDMSFEESEVMECKTEVVDEVEEVYGYQDEEGNTIVLPPGTDIKEIIGDGNKTLRLVQIRLSEDNTEEGRSWLSLVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01380775; iTF_00714583; iTF_00713819; iTF_00713107;
90% Identity: iTF_00713819;
80% Identity: -