Stex006122.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010000038.1:16515875-16518917[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.13 13.6 0.1 1 21 61 81 61 82 0.95 2 13 2.2e-06 0.00026 22.1 0.5 1 23 166 189 166 189 0.95 3 13 0.00031 0.036 15.3 2.7 2 23 196 218 195 218 0.95 4 13 3.5e-05 0.004 18.3 4.0 1 21 225 245 225 246 0.95 5 13 4.1e-08 4.7e-06 27.5 1.8 1 23 257 279 257 279 0.98 6 13 2.2e-05 0.0026 18.9 1.0 2 23 289 310 288 310 0.97 7 13 0.04 4.6 8.7 0.5 3 23 318 338 317 338 0.97 8 13 1.6e-06 0.00018 22.6 2.5 1 23 344 366 344 366 0.99 9 13 1.1e-05 0.0013 19.9 2.6 1 23 372 394 372 394 0.95 10 13 2e-05 0.0023 19.1 1.4 1 23 400 423 400 423 0.94 11 13 9.5e-08 1.1e-05 26.4 1.7 1 23 429 451 429 451 0.98 12 13 4e-07 4.6e-05 24.4 3.6 1 23 457 479 457 479 0.98 13 13 7.9e-06 0.00091 20.4 0.9 2 23 486 508 485 508 0.95
Sequence Information
- Coding Sequence
- ATGGGCGAAGTCATAGAAATTCTGAAAGTGGAAAACACTTATCTGCCTGAGGACGGGATGACCGAGGTTGTCGCGGACCTATTGGTGAAGAGTGACGAAGGAACACTTATTATACCTGATATAATTGATACCGAAGAAGTACTAGCACAAAATGGTCAAATTGTGCAAATTATCGGAGATTACGAGTGTGTCACTTGTCACCGTATTTTTCCAAGCGAGGATATGTTGAAGGAGCACTTACAAGTATGCAGAGAAGATGATGATGTTGATATTTTAGAGTTAGGAAGGATGGGAGAGATAGATTCCGAAGATGAAGATGAAGAGGACGATGATGAAATTAATGTTGATGATCCTGATTATAATACAGATTCAACAAGTCCATcagaTTCCCAAAActcaaagaataataataagaaggTGTCAATAAAGCCAGTATCCGAAGGCCAGTGTCATTGCTGTGctgaagatttaaaaactgCTCATTCAGGTGGACCATTCAAGTGTACAAACTGTGAtatgtcttttaaaaaagcatcttCTTTAGAAAGGCATTTAGTCGTAGTTCACTGGGAATCGGAAGCATGCACTTGCAAAGAATGTGGTGctaatttttctgataaaaaagcTCTTGATAAACATCGCTATACAACACACATGAAAACTagtaaagtatataaatgtgACAAATGTGATACCTATTTCTCAAGAAGTTACCACTTAAATCGTCATAAACAGCAGTCAGGTTGTCATGGTGATATCAGTAATAGCTTTTCCTGCCAgGTATGCAGTAAAGTATTTACTCGTAAAGATAATTTAAGAGAACATTTAAGAACTCATGCTGGAATgccacaaagaaaaaagaaatcttgtTCTCTTTGccctaaacaattttatacaaatcaaCAATTGATAATTCATCAGCGAATGCATACTGGAGAGAGACCAGTAGCATGCGATCTTTGTCCTAAAACTTTCTTATCCACTTTGGCTATGAAAAAACATCGCAGAGTTCACACTGGGGAAAAACCTTTTGAATGCAAATATtgtcaAAAGAAATTTGCAGCAAGAGAAACTTTAAATCGTCATCAAAGAACTCATACAGGAGAAAAACCTCATGTGTGTCAGTAttgtaataaatcttttatacaAGCTGCTCAATTGAGAGCACACATTTTTCATCATACTGGAGAAAATGGCTTCTACTGTGATGTATGTGGTAAAGCATTCAATCGCAAAGCTCGTCTTACTAATCACAAGAAATTTGTTCATGAAGGTGCTACACCATTTAAATGTGAAACATGTGACAAATCATTTACACGAAAGGAAGATTTATCAAAACACATAAATCTACATGCTGGAATTAAACctCATAAATGTGACACTTGTGGAAAATGTTTTGCTGCTAAATCTTCTTTACAAGCTCATATGAATACTCACAGACGGGAGCCACCTCAATCATGTGCTGAATGTGGAAGAGCATTTATACGTCAAGATTGTTTAATGCGACACATACGTGCAAAACACAGAGATTTATTAGAAGATGTTTTAGGAGAAGcagaaaagaaacatttacaattgcaaatgtttaatattgcaTACAATgctgctgaaaaaataaaagcaggaGAAACCAATCTTCTTTCAACAGATGAATTATTGAAAGCCAtcacagaacttttaactattcttatagaaaaagaaacattagagTTGTTTGGCTGGTTGCAATCACCATTGCAAGATGTTCTAGAAGCTGTAATCCGAAGATGCGGTTGTGAACCACTGACAATAGAAAGTGATTTGCCACTGCCAGATAGATTGAGAGGAAATGTCAAACTCTTATTTAATGCTGTCATAGAAGACGAAAgtgtaaaatctttattaaccACTCAAACAGTGGATGAAGTTATAATGCACGTTCTTAATACAAAGAAAGATTAA
- Protein Sequence
- MGEVIEILKVENTYLPEDGMTEVVADLLVKSDEGTLIIPDIIDTEEVLAQNGQIVQIIGDYECVTCHRIFPSEDMLKEHLQVCREDDDVDILELGRMGEIDSEDEDEEDDDEINVDDPDYNTDSTSPSDSQNSKNNNKKVSIKPVSEGQCHCCAEDLKTAHSGGPFKCTNCDMSFKKASSLERHLVVVHWESEACTCKECGANFSDKKALDKHRYTTHMKTSKVYKCDKCDTYFSRSYHLNRHKQQSGCHGDISNSFSCQVCSKVFTRKDNLREHLRTHAGMPQRKKKSCSLCPKQFYTNQQLIIHQRMHTGERPVACDLCPKTFLSTLAMKKHRRVHTGEKPFECKYCQKKFAARETLNRHQRTHTGEKPHVCQYCNKSFIQAAQLRAHIFHHTGENGFYCDVCGKAFNRKARLTNHKKFVHEGATPFKCETCDKSFTRKEDLSKHINLHAGIKPHKCDTCGKCFAAKSSLQAHMNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDVLGEAEKKHLQLQMFNIAYNAAEKIKAGETNLLSTDELLKAITELLTILIEKETLELFGWLQSPLQDVLEAVIRRCGCEPLTIESDLPLPDRLRGNVKLLFNAVIEDESVKSLLTTQTVDEVIMHVLNTKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691361;
- 90% Identity
- iTF_01380772; iTF_00713816; iTF_00714579;
- 80% Identity
- -