Basic Information

Insect: Sycophila texana
Gene Symbol: -
Assembly: GCA_035582955.1
Location: JAWWEN010001322.1:1946-3836[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.25 29 6.2 0.7 2 23 119 140 118 140 0.97

2 15 2.8e-05 0.0032 18.6 0.3 2 23 145 166 145 166 0.98

3 15 7.7e-06 0.00089 20.4 2.5 2 23 173 194 172 194 0.97

4 15 1.1e-05 0.0013 19.9 0.6 1 23 228 250 228 250 0.98

5 15 0.0004 0.046 15.0 0.2 1 20 256 275 256 278 0.94

6 15 1.6e-06 0.00019 22.5 2.3 1 23 284 306 284 306 0.97

7 15 3.3e-06 0.00038 21.5 1.6 1 23 312 334 312 334 0.95

8 15 6.5e-05 0.0074 17.5 0.4 1 23 340 362 340 362 0.98

9 15 2.3e-05 0.0026 18.9 7.2 1 23 368 390 368 390 0.97

10 15 8.4e-08 9.7e-06 26.6 0.5 1 23 395 417 395 417 0.97

11 15 0.00011 0.013 16.8 0.3 1 23 423 445 423 445 0.97

12 15 3.4e-06 0.00039 21.5 4.5 1 23 451 473 451 473 0.97

13 15 7.2e-07 8.3e-05 23.6 1.8 1 23 479 501 479 501 0.99

14 15 4.6e-06 0.00053 21.1 0.7 1 23 507 529 507 529 0.98

15 15 6.5e-05 0.0075 17.5 1.0 2 23 536 558 536 558 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.25	29	6.2	0.7	2	23	119	140	118	140	0.97
2	15	2.8e-05	0.0032	18.6	0.3	2	23	145	166	145	166	0.98
3	15	7.7e-06	0.00089	20.4	2.5	2	23	173	194	172	194	0.97
4	15	1.1e-05	0.0013	19.9	0.6	1	23	228	250	228	250	0.98
5	15	0.0004	0.046	15.0	0.2	1	20	256	275	256	278	0.94
6	15	1.6e-06	0.00019	22.5	2.3	1	23	284	306	284	306	0.97
7	15	3.3e-06	0.00038	21.5	1.6	1	23	312	334	312	334	0.95
8	15	6.5e-05	0.0074	17.5	0.4	1	23	340	362	340	362	0.98
9	15	2.3e-05	0.0026	18.9	7.2	1	23	368	390	368	390	0.97
10	15	8.4e-08	9.7e-06	26.6	0.5	1	23	395	417	395	417	0.97
11	15	0.00011	0.013	16.8	0.3	1	23	423	445	423	445	0.97
12	15	3.4e-06	0.00039	21.5	4.5	1	23	451	473	451	473	0.97
13	15	7.2e-07	8.3e-05	23.6	1.8	1	23	479	501	479	501	0.99
14	15	4.6e-06	0.00053	21.1	0.7	1	23	507	529	507	529	0.98
15	15	6.5e-05	0.0075	17.5	1.0	2	23	536	558	536	558	0.92

Sequence Information

Coding Sequence: ATGGACCTACAGACTGCAAAAGATGAGTTGGAAGATGTGCTTCTTATGAATAGTCAGGTTATGGATGACAATATTGTAAGCATTGTACTCAAAGAAGAATCTAGAGAGAAATACGAATCAAACTACATGGAGGACATCTGTTTGGGGACCTTCGATAAGGTGTTTCAACCCATTGACCATCATGAGGTGGACTTTCCTGATGATATGgtaaaattagaatttgatGGAGAAAATAATCACCATCATTGGGCAGCTCAATTAGCAAATGCAACTTTATCAGATAGTGGAGAGTATGGTGGTCAAGGCGATCATCACTTCCTCAGTGGGAATGCGGCacaaaaattctataaaatccAGTGTACACTTTGTAAAAAgtggtttttaaataatgattcaaTGGTGACGCATTTGAAAATGCATTGCAGTGGTAATACTTGTGAAGTCTGTCAGCAAAGTTTTATAGACAATGCAGGATTACATGCTCATATGTTAACACACGTTGGTATGAGTCCAGTGGAATGTACTATTTGTCAAAAAAGATTTGCTTATAAATGGTGTTTGCGTAATCATATGCAAACACATATggcaaataaacaatttgaatATGACACCTTACaacaagcatttttaaaaaggtacAGTCAAAATAATGATCATATGATTCGTGATGAAGAAAGGCCTTATACTTGTCAAGTTTGTCAAATGTTGTttagagaaaaaggaaatctGAATCGTCACATGTTAATACATACTGGAGATAAACCTTACAAGTGTGACATATGTTTTGCTTCCTTTCGTGAAAAAGCtaaactaaatattcatatGCCAGTTCATACAGGACATAAACAGTTCAAATGCACTATGTGTCATAGATCTTTTGCTCAAAAAACTGCTTTAAATAATCACATGCTTGCCCATAGTGGGGAGAAACCTCACGCATGTAATATTTgtgaaaaaacttataaaaggAAATCTGAATTAATTAGGCATTCAATGATTCACACTGGAGAAAGACCTTATGAATGTCAAGAGTGCTTGATGACATTTcgagaaaaagcaaaattgaATTCTCATATGCTTGTTCATACAGGTGAAAAGCCTCATGAATGTCACATTTGTCATAAAGCATGTGCTCGAAAATCAGATTTAAATAGCCATATGCTTTCTCATACTGGTGGTCAGTATGATTGCAAagtttgtgaaaaaatttttacaagaaaatctgATTTAAATAGACATATTTTGGTTCATACTGGAGAAAAACCTTATGCTTGTGATTACTGCGATATGGCTTTCCGTGAAAAAACAAGACTGAATTCTCATATGGTAATTCATACTGGGGATAAAAGACACATTTGTCATATTTGCAATAAGGGCTTTCGAGAAAAATCAATGCTAAGAAAACATATGTTAAGTCACACTGGTGACAGGCCTTACGAATGTTATGTTTGTCAAAAATCATTTACCCAAAAAACAACTCTTAATAGCCATATACTTACGCACACTGCAGAAACATCTTATGAGTGTACTATATGTAGAAAAGTTTATCGAGAAAGATCAGCACTGAGAAAACATCTTGTAACGCATGctgcagataaaaataatgaatgtcCCATTTGCTTAAAGAAATTCACTCATAAATCAGCACTGAGTAGTCACATAACAGCTACTCATTCTTTGTAA
Protein Sequence: MDLQTAKDELEDVLLMNSQVMDDNIVSIVLKEESREKYESNYMEDICLGTFDKVFQPIDHHEVDFPDDMVKLEFDGENNHHHWAAQLANATLSDSGEYGGQGDHHFLSGNAAQKFYKIQCTLCKKWFLNNDSMVTHLKMHCSGNTCEVCQQSFIDNAGLHAHMLTHVGMSPVECTICQKRFAYKWCLRNHMQTHMANKQFEYDTLQQAFLKRYSQNNDHMIRDEERPYTCQVCQMLFREKGNLNRHMLIHTGDKPYKCDICFASFREKAKLNIHMPVHTGHKQFKCTMCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHSMIHTGERPYECQECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLSHTGGQYDCKVCEKIFTRKSDLNRHILVHTGEKPYACDYCDMAFREKTRLNSHMVIHTGDKRHICHICNKGFREKSMLRKHMLSHTGDRPYECYVCQKSFTQKTTLNSHILTHTAETSYECTICRKVYRERSALRKHLVTHAADKNNECPICLKKFTHKSALSSHITATHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01469925;
90% Identity: iTF_01110359;
80% Identity: -