Stex004727.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sycophila texana
Gene Symbol
-
Assembly
GCA_035582955.1
Location
JAWWEN010000020.1:16148361-16151428[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0011 0.13 13.6 0.3 1 20 65 84 65 85 0.95
2 20 0.001 0.12 13.7 2.7 1 20 103 122 103 124 0.94
3 20 5.6e-05 0.0065 17.7 0.5 2 23 164 186 163 186 0.94
4 20 0.017 2 9.8 0.2 1 23 190 213 190 213 0.92
5 20 0.0047 0.54 11.6 3.7 3 23 221 241 220 241 0.97
6 20 0.00074 0.086 14.1 0.7 2 23 249 271 248 271 0.94
7 20 0.00016 0.018 16.3 2.3 1 23 281 303 281 303 0.98
8 20 0.039 4.6 8.7 0.3 2 23 310 330 309 330 0.96
9 20 1e-05 0.0012 20.0 0.9 3 23 338 358 337 358 0.97
10 20 3.7e-05 0.0043 18.2 4.8 1 23 364 386 364 387 0.96
11 20 7.2e-05 0.0084 17.3 1.4 2 23 486 507 485 507 0.96
12 20 1.6e-06 0.00018 22.5 2.5 1 23 513 535 513 535 0.98
13 20 5.9e-06 0.00069 20.7 0.6 1 23 541 563 541 563 0.97
14 20 4.6e-05 0.0053 17.9 0.3 2 23 570 592 570 592 0.96
15 20 0.0019 0.21 12.9 2.3 1 23 597 619 597 619 0.97
16 20 1.2e-05 0.0014 19.8 0.8 1 23 628 650 628 650 0.98
17 20 3.5e-06 0.00041 21.5 0.4 1 23 656 678 656 678 0.97
18 20 5.3e-05 0.0061 17.7 0.7 2 23 685 706 684 706 0.97
19 20 9.9e-06 0.0011 20.0 1.1 3 23 714 734 712 734 0.97
20 20 0.00014 0.016 16.4 0.1 1 23 740 762 740 762 0.97

Sequence Information

Coding Sequence
ATGCCGGTGTTCGACGTCGGCCAGACCTCCATTCACACGATTCTGCAAAAGAACGTATTTTTGGTGAACTCGATCGACTGCAACAGAGAACTCTTCAAAATCGAGGAGGCAGACGTGGAAGAGGATCAGACAAAGAGAATCGGCTTAAAGCGTTCGTCGAGGATCAGACGAAGCGAATCGACTCCAGAAGAGTTCAAATGCGACTCGTGCGAGGAGACCTTCGATAACCGGTCATCCCTCATCATCCACAAGACAGAAAATTCGATCAGGCGCACGCGGGAGGCACTACGACAACCCGAGCTGAAATACGAGTGCGACCGCTGTAAACGTTTTTTCGCTCGCAAAGGCTCCCTTGTGCGCCATCATCACAGCTGCAGCGCCTCCAACGAGGCAGCGGAAGAGCGTCCTACGATCCGCCGGCGCCGCTGCGCCAGAAAATCCGCGGAGGAGCACGGCGGCAGTGGCACCACCCTCACCGAAACTCCCGTTTCCTGCGACGCATGCGGCAAGATGTTTAAGAAGCGGAAGTACCTGAAAGCCCACCAAATGCTGGCGCACGCGGAGGAGCACGCGTGCCTCATATGCGACGAGCGCTTCGACGCCGTGAGCAAGCTCAGGCTGCACATGGCCGAGCGTCACAGCGACGACTACTCCGAGTTCTGTCAGATCTGCCACAAGGGCTTCCACTCCCGCCAGTCGCTCAAGGTCCACGTGGCGTCACACGCCCGCGACTCCCAGATCTGGGAGTGCGAGCTCTGCGCCAAGAGGTTCCGTCACGAGGTCTACCTGCGAAAACACGTGCAGCTGGTGCATGTTGAGCGCATGGACCGCAAGACGACATTCTCTTGCGAGATATGCGGCTACACCACAACTTACAAGAACTCCTTCCGCGAGCACATGTACAAACACACGGGGGAGGACGTCGTCGAGTGTGATGTGTGCGGCAAGCGCATGCGGAAAGCTTACCTCAGGATGCACTCGAGAATTCACACTGGTGAAAAGCCCGAGATCTGCGAGTACTGCGGCAAGAGCTTCAGCGCGAGGAAGTACCTCACGAAGCATAGAGTCACTCATACTGGCGAGAAGCCCTACCAGTGCAAGCTCTGCGGACGGAGGTACACGCAGCGAGGTACCCTCACCTTGCACTTTCGAAAGCACCACCCGACGGAGGCTAAAAATGGCGAGTGTCCAATCGCAGACAGGAGAAAAGACGATGCTGGTCTGATCGTAGAAGTCTACGGTGAGAGTGAGCAGCATAAAACTACTGCTGATATCGCAGCTGATGATATTAATAATCAGCTAGAGAGTCACTTCGAAATAGTCGAGGAAGATCTTGTTGATGAAACTTATCATATCAAATCCGCTGTCGACTCTGAAAGTTTCCGCTCCGGCGCACGATACTCCCCGCAAAAGGATCCGATCCCCGTCTCCCCATCACGGCAGGCCGACGGTATCGAGTGTCCCCACTGCTCGCGCCGCTTCAAGTCGAAGAGCCTGTTCGAGGGTCACCTGATATCCCACAGCGACGCTCGCCCCCACCGCTGCGAAATCTGCGACAAGCGCTTCAAGCGCAGCAATACGCTGGCGGTGCACCGGCGCATTCACACGCTGGACCGGCGTCACGTCTGCGACTTGTGCGGACGGGCCTTCGTGCAGGCCTCGCAGCTCGGCAcccaccgccgccgccacctcGAGCGCTACGCCGGCCGCTGCGCCCAGTGCGACAAGGGCTTCGTCACCCAGGCGGAGCTCCGCGGCCACATGAACTCGCGCCACGGCGCCCGCGAACACGTGTGCTCGATCTGCGCCCGGGCCTGCCCCACGAGGCACGCGCTCGCCCGCCACGCTCGCTCCCACGAGCCGGACTTCCGCCCGGCGAAGCATCAGTGCGAGGTCTGCGGCAAGACCTTCGCCTTCAGGAACTCGCTGGTGGCCCACGCAAAGTCGCACACCGGCGAGAACAAGCACGAGTGCCCCACCTGCGGCAAGGCACTGGCTTCCAAGTCCTCGCTGCAGGACCACTTGCGACTGCACGGCGCCGAGAAGAGCCTCGTCTGCGAGGTCTGCGGCAAAGCCTTTCACAAGAGGACGACCCTGGTGGTGCACCGACGCGTGCACACCGGCGAGAAGCCCTACGGCTGCGACATCTGCGACAAGGCGTTCACGCAGCACTCCACCCTCGTCATCCACCGGCGGTATCACACCGGCCAGAGGCCGTATCAGTGCGCCCAGTGCGGCAAGTCCTTCGTGTCCAGGGCCGTGCTCAATGGACACGGCAAGGTGCACGCGAACGGCTGA
Protein Sequence
MPVFDVGQTSIHTILQKNVFLVNSIDCNRELFKIEEADVEEDQTKRIGLKRSSRIRRSESTPEEFKCDSCEETFDNRSSLIIHKTENSIRRTREALRQPELKYECDRCKRFFARKGSLVRHHHSCSASNEAAEERPTIRRRRCARKSAEEHGGSGTTLTETPVSCDACGKMFKKRKYLKAHQMLAHAEEHACLICDERFDAVSKLRLHMAERHSDDYSEFCQICHKGFHSRQSLKVHVASHARDSQIWECELCAKRFRHEVYLRKHVQLVHVERMDRKTTFSCEICGYTTTYKNSFREHMYKHTGEDVVECDVCGKRMRKAYLRMHSRIHTGEKPEICEYCGKSFSARKYLTKHRVTHTGEKPYQCKLCGRRYTQRGTLTLHFRKHHPTEAKNGECPIADRRKDDAGLIVEVYGESEQHKTTADIAADDINNQLESHFEIVEEDLVDETYHIKSAVDSESFRSGARYSPQKDPIPVSPSRQADGIECPHCSRRFKSKSLFEGHLISHSDARPHRCEICDKRFKRSNTLAVHRRIHTLDRRHVCDLCGRAFVQASQLGTHRRRHLERYAGRCAQCDKGFVTQAELRGHMNSRHGAREHVCSICARACPTRHALARHARSHEPDFRPAKHQCEVCGKTFAFRNSLVAHAKSHTGENKHECPTCGKALASKSSLQDHLRLHGAEKSLVCEVCGKAFHKRTTLVVHRRVHTGEKPYGCDICDKAFTQHSTLVIHRRYHTGQRPYQCAQCGKSFVSRAVLNGHGKVHANG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-