Stex005691.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- ZNF219
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010000038.1:9790639-9794642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3e-05 0.0034 18.5 0.6 1 23 93 115 93 115 0.99 2 23 1.7e-07 1.9e-05 25.6 0.9 2 23 122 144 121 144 0.95 3 23 0.59 68 5.0 0.8 1 23 150 172 150 172 0.97 4 23 1.5e-05 0.0017 19.5 2.2 1 23 178 200 178 200 0.96 5 23 0.0002 0.023 16.0 0.8 1 23 206 228 206 228 0.97 6 23 1.7e-05 0.002 19.3 0.8 1 23 234 256 234 256 0.98 7 23 0.0028 0.32 12.3 3.9 1 23 262 285 262 285 0.96 8 23 0.037 4.3 8.8 0.2 1 23 309 332 309 332 0.93 9 23 2.1e-05 0.0025 19.0 1.0 1 23 349 371 349 371 0.98 10 23 0.00077 0.089 14.1 0.2 1 23 395 417 395 417 0.99 11 23 3.2e-05 0.0037 18.4 0.0 2 23 424 446 423 446 0.92 12 23 0.00045 0.052 14.8 0.4 1 23 452 474 452 474 0.97 13 23 0.00029 0.033 15.4 0.2 1 23 480 502 480 502 0.95 14 23 7.9e-05 0.0091 17.2 1.1 1 23 508 530 508 530 0.96 15 23 0.00023 0.026 15.8 0.1 1 23 536 558 536 558 0.97 16 23 0.019 2.2 9.7 6.1 1 23 564 586 564 587 0.95 17 23 4.8e-06 0.00055 21.0 2.1 1 23 726 748 726 748 0.99 18 23 0.0001 0.012 16.9 2.6 1 23 754 777 754 777 0.96 19 23 0.00019 0.022 16.0 1.6 1 23 783 805 783 805 0.96 20 23 8.2e-06 0.00095 20.3 0.8 1 23 811 833 811 833 0.98 21 23 0.093 11 7.6 2.9 1 23 839 861 839 861 0.96 22 23 3.3e-06 0.00038 21.6 1.0 1 23 867 889 867 889 0.97 23 23 6e-05 0.0069 17.6 2.5 1 23 895 918 895 918 0.98
Sequence Information
- Coding Sequence
- atgtataagctAATTTGCGTACCACCGAGCTCATGCTTGAACTTGAGTGGCGAGGTCATCACCATCATAACTGCACCGCTGCAAGAACCTGCAGATCCACTGGCGTCTTCTCCGCAGAGGAAGCGAAAACGAAAAGCAGCAAGACCGCAAGGTGAATCAACGCGGAAGGcgaaaaggaaattaaacGCCACGCGTAAGCTGCGGGACGCGCCGGAGCTCGTGCAGCGTCGCGCTGAAGCGGCCCAGGCAAGAATAACCGTCGACGGCGCAACTGTGTACAAATGCCCCGAGTGCGACAAGCTCCTGTCCACGGCGTACAACTACTTCGCCCACAAGCGCATCCACACGCAGGAAAAGCTCTGTACCTGCGAGATTTGCGGCAAGAGCTTCACCGCCGCGAGCTCGCTGACGCGCCACATGCGCGAGGTGCACGACAAGATCAAGGACTTCAAATGCGGATTCTGCGAGCGCAAGCTCGCCTCCAAGATATCGCGCGACGAGCACGAGCGCACGCACACGGACGAGCGGCCGCACGTCTGCGACGTCTGCGGGAAGCGCTTCAGGCAACGCGCCTCTCTGTCCGTGCACAAGCGCTTCCACTCCAAGAGCACGCTTTTCAACTGCCGAGAGTGCAATCGCGGCTTTCCCAGGAAGCAGGACATGGAGCGGCACGAGCTCACTCACACTGACCAGAAGCCGTACGCCTGCAAGATCTGCGATAGGAAATTTAGGAGCTCCGCGTCGGCGATTAGACATCGGCAGACACACGACGGGGATCAGAAGCACACGTGCAAGACTTGCGGCGATAGCTTCGCTCAACGGAGATACCTTAAGAATCACACAAAAAACATGCACAACTACGCAGCACCAGCGAATCAGCCGgctaaagagaaagagaagctcGAAAAATGCGAAACTTTTTCGTACATGTGCGGCGTCTGCGACAATTTGTTCGAGAGCGAGACGGAGCTGCTGCGTCATCTACACGCGGATCACAGCGACGAGATGAAGGGCCACAGCAAAACCTCCACGAAGTCGGTCTGCTACGAGTGCAGCACCTGCGGCAAGACCTACCAGAAGAAGCTGAACCTGGTGCGCCACTTGCAGGTGCACGACAAGCAGGCCTCCGGCGAGGAGGGCCTCATCCAGAAGTGCAGGTTCTTCGTGAACAAGGTGCTGTTCTACAAGTGCCCGGACTGCTCGGCGGTGATGGCGAATCGGCGCACCTTCCTGCGACACATACGCGTGCACGCGAACGAGCGGCCGGTGGTCTGCGAAGTGTGCGGCAAGACCTACCGGGTCGAGGAGGACCTCAAGCGCCACATGGACGACGTGCACCGGAAGATCAAGCGGTACGCCTGCGACATCTGCGGCAAGTCCTTCGCGGCGAAGGCGACCTGCAACGCCCACCGGCGCATCCACACCGGCGAGAAGCCCTTCCTCTGTCCCGTGTGCGGCAAGAACTTTAGGTCCATCAATCTTCTGGGGATACACAAGCGCATCCACACGGACTACAGGCCGCACCAGTGCTCCTTCTGCGATAAGGCCTTCAGGGACAAGCAGAAGCTTTTGGCTCACGAGGCCATTCACACGGGCATCAGGCCTTACCCCTGCGACGTCTGCGGCAAGCGATTCGCGGCTAAGGGAGAGGCGACCAGGCACCGCAGCGTACACTTCTCCGATCGGCCCCACGTCTGCTCAGCCTGCGGCACCGGATTCAGGCTCTGTCGATACCTGCGCACTCATATAAAGACTCACCACAAGGACAAGGCCGAAGACATGATCAAGAGACCTCGGCAGATTAGCAGCAGTTTCAAAGAATTCCAAAAGAACTTCAAGCATTCGATCTCAGTCCCAAAGAGACGCCCTGCACCTCAGACCTCCTCGAAGCCCCCGAAAAAAGGAACCGCCCGCTCCACGAAAGGAAAGTCCTCGAAAAGACTATCCTCCAGATCAAAAACGAGCTCGAAGAGCCGCGCCGTCAGTGTAAAACCGGAGCCCGAAGATCCGGAAACTTCAGCCTCGATCAAGGTAGAACAGGCGACCGCCTCAAATGAGAGCCGGGACTGGAGCGATGACGAACCCCCCAACGATAACGACTCGGACTACGACAAACTCACAGTGTGCGAGGCGCCAAAATCGAAAAAGCGCCGAAAGCGCGCCGTCGACACAGCCTTCCAGTGCGAGCAGTGCAGCAAGCGCTTCCGCCAGGAGACCAGCTACCAAATCCACATGCGCATCCACACCGGCGAAAAGCCCTACACCTGCCACGTGTGCGGCAAGCAATTCGGCCAGCCGGGAAGTTTGTATTATCACCTGAAGCACGTGCACGGCGGCGTGAAGAATCACGCCTGCGACATTTGCGGCCGCTGCTTCGCGATGAAGACGGCGATGGAGGACCACCGGCGGATTCACACCGGCGAGCGGCCCTACGTCTGCGACTCCTGCGGCAAGACCTTCAAGACGAAGGCCTCCCTCTATATTCACAGCAAGATACATACGGACGAGTACCCGTTCAAGTGCTCGTACTGCAAGAAGCTCTTCCGCTGGAAGCAGCAGATGATCAGCCACGAGACGACGCACACCGGCGAGAAGAATCACATCTGCGACATTTGCGGCAAGGGCTTCGGGGTGAAGAACGAGCTGACCAGACACCGGCGGACGCATTCCTCGGACAAGCCGTTCACGTGCCAGAAGTGCGGAGTCAGCTTCGGACAGAAGAGATACTTGACGAATCACAATCGAACGAGACACAAGACCAAGGCGACGGTTAATTGA
- Protein Sequence
- MYKLICVPPSSCLNLSGEVITIITAPLQEPADPLASSPQRKRKRKAARPQGESTRKAKRKLNATRKLRDAPELVQRRAEAAQARITVDGATVYKCPECDKLLSTAYNYFAHKRIHTQEKLCTCEICGKSFTAASSLTRHMREVHDKIKDFKCGFCERKLASKISRDEHERTHTDERPHVCDVCGKRFRQRASLSVHKRFHSKSTLFNCRECNRGFPRKQDMERHELTHTDQKPYACKICDRKFRSSASAIRHRQTHDGDQKHTCKTCGDSFAQRRYLKNHTKNMHNYAAPANQPAKEKEKLEKCETFSYMCGVCDNLFESETELLRHLHADHSDEMKGHSKTSTKSVCYECSTCGKTYQKKLNLVRHLQVHDKQASGEEGLIQKCRFFVNKVLFYKCPDCSAVMANRRTFLRHIRVHANERPVVCEVCGKTYRVEEDLKRHMDDVHRKIKRYACDICGKSFAAKATCNAHRRIHTGEKPFLCPVCGKNFRSINLLGIHKRIHTDYRPHQCSFCDKAFRDKQKLLAHEAIHTGIRPYPCDVCGKRFAAKGEATRHRSVHFSDRPHVCSACGTGFRLCRYLRTHIKTHHKDKAEDMIKRPRQISSSFKEFQKNFKHSISVPKRRPAPQTSSKPPKKGTARSTKGKSSKRLSSRSKTSSKSRAVSVKPEPEDPETSASIKVEQATASNESRDWSDDEPPNDNDSDYDKLTVCEAPKSKKRRKRAVDTAFQCEQCSKRFRQETSYQIHMRIHTGEKPYTCHVCGKQFGQPGSLYYHLKHVHGGVKNHACDICGRCFAMKTAMEDHRRIHTGERPYVCDSCGKTFKTKASLYIHSKIHTDEYPFKCSYCKKLFRWKQQMISHETTHTGEKNHICDICGKGFGVKNELTRHRRTHSSDKPFTCQKCGVSFGQKRYLTNHNRTRHKTKATVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -