Stex022396.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010028219.1:633-1127[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-11 3.1e-08 34.0 0.0 3 38 14 49 12 54 0.90 2 2 8.1 1.1e+04 -3.0 0.0 14 22 131 139 127 140 0.65
Sequence Information
- Coding Sequence
- ATGAGTcaaccaaaaagaaaaagaaaagtttacgAGGACGAGGTTATGTCTAAGGCTTTGCATTCTGTGCAGTCTGGAATGTCAATTGGTGCTGCTagcaagaaatttaatttaccacGATCTTCACTGCATAGTAaagtgacaaaaaaatataaaaatgagaaaactgGTCCAGGCACAATATTCAGCAAACAAGAAGAAAGTGCTCTGGCGCAATGGGTTTTGCAAATGAGTGAAAGAGGTTGTCCGATCACTAAAGAGCACTTAATCAACAGTGTCGCTATTGTGATAAAGAAAAGTGGAAAAGAAACTCCTTTTGTGAATGGTCGACCAGGAAGGCACTGGTGCGAAGGGTTCTTGAAGCGACATAAGCAGATTAGTGTGAGGTTAAGTGAAAATGTGTCTTTAGCAAGAGCTGTAGTATCTGAAGATAGTATTAAGAAGTGGTTTGCACATATAcaagaatttttgttaaaagaagaaatatttgatata
- Protein Sequence
- MSQPKRKRKVYEDEVMSKALHSVQSGMSIGAASKKFNLPRSSLHSKVTKKYKNEKTGPGTIFSKQEESALAQWVLQMSERGCPITKEHLINSVAIVIKKSGKETPFVNGRPGRHWCEGFLKRHKQISVRLSENVSLARAVVSEDSIKKWFAHIQEFLLKEEIFDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -