Stex030932.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010055043.1:5190-5735[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-12 4.7e-09 36.6 0.0 2 35 16 49 15 53 0.93 2 2 6.8 9.5e+03 -2.8 0.0 14 25 57 67 56 67 0.79
Sequence Information
- Coding Sequence
- ATGCCACGAATATTTCCAAAACAGGGATCGTTACAAAGTTGGAGGGAAAATGATATGGCTAATGCCATTAGTTATTATTTAGAAGGCAAAATGGGTTTTCTGAAAGCTTCAATTGCATTTGGGGTACCCAAAACTACATTAAGAAGACAAGTTGATTTATTGAACTCAAATGGACTATCAGTTCTCGAGGCatccaagaaaaaaattgggtgTTACTCTGTGTTTACAGAAGAGCAAGAACAGAAATTGGTCGAGTACTTATTAAGTTTCGAAGAAGGTTTATTTGGACTTACCCAAACTGATGTACGTAAACTGGCTTATAGTTTAGCTATTGCTAATAAAATTGAGCATCCTTTTAAAGAAGAAGAACAGATGGCTGGGTATGATTGGTTATATGGTTTTAAGAATAGACATCCTCAGTTATCACTAAGAAGTCCTGAGCAAACATCACTGATGAGAGCCAAAGGTTTTAATCGCACTGTTGTCAGTCAGTATTTTGATCTGCTAGAGAATTTGATGGTCATTCTTCACATACAAAAAACCTAG
- Protein Sequence
- MPRIFPKQGSLQSWRENDMANAISYYLEGKMGFLKASIAFGVPKTTLRRQVDLLNSNGLSVLEASKKKIGCYSVFTEEQEQKLVEYLLSFEEGLFGLTQTDVRKLAYSLAIANKIEHPFKEEEQMAGYDWLYGFKNRHPQLSLRSPEQTSLMRAKGFNRTVVSQYFDLLENLMVILHIQKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -