Sque004099.1
Basic Information
- Insect
- Sycophila quercilanae
- Gene Symbol
- -
- Assembly
- GCA_035582995.1
- Location
- JAWWEP010000022.1:11661080-11668854[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0023 0.26 12.6 5.5 2 23 566 588 565 588 0.96 2 9 0.73 83 4.7 2.4 2 23 1329 1351 1328 1351 0.94 3 9 3 3.4e+02 2.7 0.5 1 23 1490 1513 1490 1513 0.93 4 9 0.0039 0.44 11.8 1.3 3 23 1646 1667 1645 1667 0.93 5 9 0.0082 0.93 10.8 0.1 3 23 1824 1845 1822 1845 0.94 6 9 0.00013 0.015 16.5 0.4 1 23 1854 1876 1854 1876 0.98 7 9 0.0042 0.47 11.7 1.8 3 23 1940 1961 1938 1961 0.96 8 9 7.2 8.2e+02 1.5 0.3 2 14 2050 2062 2049 2065 0.88 9 9 2.1 2.4e+02 3.2 0.8 3 20 2076 2093 2074 2097 0.86
Sequence Information
- Coding Sequence
- ATGCATTCGGAAGCAATAGCCAAAGACAGTGCAAAATTAGCAGATCATAATTTATCACCAGCAGCAAGTGAAAAGAGTCTTAAAGTTCATGCTAAAAGTGATAAAGACTCTCCTAAAATCGTTCAGTCTGAAGGTGAAAGTCTCACTGAAGCCAAAGGTCTTGTAAACtctataaaaagttttaacgaGCATAATGACACATGTACAGATATATTGCAAGTATCCAttgatgtaaataatgaatctCAACCAAATAACAATAAAGATATATGCTCTGACTCTCacaagaataaaattacagaAGATACCAAAACTACAATTGCAGTAGAAATTGCAACTGACACAATATCAAACCAGCAAACCActctgattaataaaaatgattcagTTTGTGAAGAACAATTAACAAGATGTTCTAAAAGAGTTTCTCTACGAGCTTTTCGtaaagtgaaagaaaataaacctGTAGTTATCACTGATAGTAGTTCAGTATGTACTATTAAACAAACcctagaaaaagaagaaaatctttctaaaactttaaatgaaaacaaagtTGATGCTGCTGTTGTATCAAATCCGGTTAACGAAGATATAGTTACAGAACTtacaaatgataaattaatttctactcAAGATGTAACTGAAGAGAATCTTAAATCTAATGTTCCAAAAATAGTTGACCATATCAATATCTCTTCTTCGAGCTTAGATGATATTGAAAAGCTAACTCCAAACTCACAAAAttctaatgaaaaagttttacaaagtGCTTCAGGAGATACAAATACAACAATTGCAGAAGGTAGTGctgataaattgaataaaagtgCAAGCACCGAATTGCaagatgtaaataaaactacaGCAAAGGTCACCGATTTAATTGTTAACCAAGAGAACGCCAATGAAGACTTTCCATCCGACCAAGGCAGCAATGAAGTATATTCTGAAAATTCTTTCACAAGTGCATTAGACGAGATGGTTACGAATGAATTCGATACATTTACAGAAACCTCGGGACCTATAGAGGAACATGAGGTAAATGCTCTCAATAATTTACAGATACCACAACTAGATTCTCTGTGCAGTGCAGAGGCGCTCCCCGCAGACACTGTCGAGGAACCtcttgaaaaagttttagacAATCTCGAGTTGCCTTCCTCGGAATCACTGAATAGTTTCAAGATACCAAGTTTCGAGACTTCAAATCTCGAGTTAGCTATTGAAACAGCCCTCGAAAATGTCGCAAGTAAGACTTGTTCTAAAGCCTTGGAAACGACCACAGAAAAGACATCAGAAAGTGAAGAGAATAGTGCCAAGAAAAGGCGGCTAGCCACTTTGctcgaattaaaaagaaagtgcaCGGAAAATCTAGATAAGAAACAAGCTGTGGATTACCAGAATCAGCTTAAAGAAGCAATTGATGCCTTGATTGCCAGCGGCTCCCTCGACTCGATCGATCCATCGTCAGACAGCTGTTTAGGAAATGCAACTGAGAACGAGGAGAACTTCGAGAGTCTTTCGGACGAATTCGACGACGAAAATCTGGCGAATCGTCCGGCAAACCACGGCGTTCAAAAAGTTCCTTCACTGGTAACCGAGCAGGGCAGCAGCTCAGCCTTCGACGAGGGAAACGAGAAAGCTAAATCTACGCCGAAGATGAACAGATCATTTTTAGAAATGAACTCCATGACATGTACATTCTGCGATCGTTGTTTCATCAGCCATCGCGAGCTCAAGAAACACGTAAAAGTGCAACACCGTCAGCGTCTAGTCATTAAGATCACCAAGACCGATTCGAACAAGCATAAAACGCAAATAGTCGGCCCAGCGGAGAACGCAGCACTTGAGCAGGAGTCTCCACTCGTCGCCGAGGTGGATGCCATCCCTCCGAATGAGCGTTTTCCGATGATCGCCGACGAAGAGACAATCACCGACGGCGAAATTAAGATAATCGTGAAAAAAGAGAGCGGCTCGAAGAACTCGCACGTCGTCAAGGAGATTAAGATCACGCCCAAGTCGTCCGACGGTGGGAGCAGCATTCGAATCCCTGGTTTCTCACCAGCGTTGTCCGACGTGAGCGCCGGGGGTAGCAGCGTCAACTCGCCCGCTGTGGAGGCTGCTGGTACAACCGTGAAAAGGTCCCGCGGTCGGCCCAGGAAGTATCCAATATTCACAGAAACCGAGATAATGGCCAAAACGATGGCCGCACAAGTTATGGTTCAAGAGGAGGACAGACTGAAGCGCCAACAGGAGCTTCACAGTGCTCCGATTTTCGAACCCGTCGAGTCAATCATACCGCCCTTTGAAGACAGAACGAAGCCCAAAGCAGTTGTGGTTGAACTTCCTGAAGTGCCAGCGGAAAGAGCcaagagaaaaaggaagctGAGAGTGTTTGACAACGAGGATACTGAAGAAGACGAATTACCACCGGTGCCGGTGCGGCCAAAAAAGAGACGAGGTCGGCCGCCGCGCAAGCGACCTGAGCAACTGCTGCAAGAATTAACCGAAAAAATGCAGCAAGCAAATCAATCGCAAAATTCGCAGCAAGCGCAAGCACAACCACCATCGATATCGCTGTCGTTGCAAGAAAAACCAGCTGAAAAACCGCCAAAAGAGCAGCCTGCATCTCAAGAACCGACGAAACTGCTGATAACAGACGAACGTCTACATCAACGAGTACCACCGCAGCCGCTGTCGCGACCGATGCCTGCTCTGGTGCCGACTTCAGTGCCAGTAAGGATCACGAATTCGTTGCCGTTGCCTTTGCTCACGACGAGCTTAACGCCAACGCTGAGGCCGACGTCGATACCACCTACGAAACAAATGCCAATACCGCCGTTGATACAAACGTCGATTCCGCCTCTGAGGCAGACGCCTGTGCCTTTGCTCATTCCGAGTCTGGCGCCAACGTTGTCGATGCCGTCGCTGGCGCCTCTGTCACCGACACCGGCGCCGTCACCGTCGCCTGCACCGATACCGGCACCGCCGGAGGCCGGCCCCGACTCGGACGAAAAGAGGCGTAAACTGGTCGAGAGCCTGCAAGAATTTATCGTCATCGCTCCCGAGGAGAAGAAGCGGCGGATGGAGGGCGAGCTCGGCCAGGAGGAGATGGAGGACGAGGCTGCCGCTCCAGAGTCGCCGGACGCTACCGACGTAAGTAAGCCAGAGAAAGGTTTACTCACGCGGAAGTTCGGTATGACGAAAGAGCTAGTCGTGCGATTGACAAAAATAGACACAGTTCCTAAAGATTGCGAGGATTTTAACGGAGATGTTGACGATTCCGAGCGGATTGACGGCGACCCGACGGCGAGCTCGGACGAGAGGCTCCGGAGGAAGCTGAACACGAAGCTCCCctgcgaggaggaggaggaggaggagagcaGCCGGGAGGCCATCAGCTCCGTCGTGAGGATGAGCCTCAGGCGGAAGCTCGAAAACAACAACAACCACGTCAACGGCGTGGAGAAGTGCCTGACGGGCAGCCCAACGACGCAGCCGGGCGACAGCCAGGCTCCTGCGGCAGCGACGTCGGATGGCGCCAAGAAACAGTTGGATTCGGCGGCGGCGCAGCAAGAAGCAACGAGTAAGAATGTACAACAATCTTCCCGATCTCAATTTATGCCTCAGATGCAGTATCAAGTCCACTCTCAGTCTCAGGCGCAGCAGCCCGTTCAAACTCAATCTCAACCTGTTCCACAGTTACAGCAACCCCAACAGTTCTGCATCCTTTTCATTCCTGACTACGACGGCAACGGCCCAAGAGACGTGGCGCCCACTGCGACGATCGTTAATTTCCAGCCCGTACCCGATAATGAGATACATAATAAGCCGCTGATCTACATGCCCACAACACCGACGAAAATTTCAGTGGACGATCATGCCAAGGCGTACGTATGCGCGAACTGCACCAAAGTACTGGACTTGATTGGCCGCCTGGAGGCTAGCGTCGGCATGACCGAAGAGGACAAAAGTGCCATCACCTGTCCCTACTGCTCGAACCACTTCCAGTCGCTATTTTATCTCGAGTACCACGTAATGCACGAGCATCTGAAGTGCGAGAACGAGAAGCAGTGCAGGCACTCCCGCGTCAACAGCCTGAGGATCCCAACTCACGAAGTGGCCACCGAGTTCGAGAATTACATCACGTTTGCTCTCAAGTGTCGCAGTTGCTACGACATTTTCGGCAACGTTCTCGCCCTGAACGATCACGTCATGCACAAGCACAAGACCCTCGTGCGCCTGAGGCCGTCGGTGACCGCGACGTCCGGCCTCAACGCCTACCCGGTGCCTTTCGTCGGCAAAAACGGCGCCATAGGCGCTGTGCTCCAGTGCCCGAGCGACTGCGTTTGTCGAATCGGCATTCGCAGCACCGACACGCCTTTACAACGCCAGCAGATGCTCAAGCGATGCCCCAACGCCATGCGTcgcctcgaaaaaattgaGCCCGCAGCCTACGAGGTCTACACCTGCACCCTCTGCAAGAGCACGTTCCTTATGAAGGACGAGGTCGTCGACCACCTCATGAAGATGCACGAGGTTTCCTGCAAATTCCCCTGCTACACGTGCCTCACGAGCTTCCGCAGCTTGCAGATTCAAGAGAGCCACCGCTGCTCTGAGACGACGCTGCAGGACTTCGACAAACTGCTTAACATTGCCATCCTGCCCACCAACGTCGGCGGCAAAGAGCACAACAACAAGTTCTTAGAACGCGAGGATTCTTCGACCGACGAGTACGGGGCAATGAAAACCACTAGCCCTCGTGCACCACCAGCCAGCAACGTCACCTCCACTGCGCCAGTCAAAAACGGATTGAAGCGCAAGAACGGTGCGACCATTGCCGCGCTGAGCCAGTTGTTGAACAAGAAGCCGAAGCTGACGAACACAGCCTCTCAACCCGCAGCCCAGAACAAACGAAAACGCAAGCGCGCCTGCCCGAAGTGCAAGAAGCGCTTCGCGTATCGCAAAAGTCTGCACGATCACGTCATTTACGAGCACATAATGAAGGGCGAGTCTGCCGATGGGCCAAAGAAGACGGCCGTTGAGTTGCTAATGCTTCTGAGCAACAACCGAGCGAATTACAAGCGCATTGAGGAGCTCGCGGAGATGCTCAACGGGTACACTGACGAGGATGGCGTTTCACTCAGGAAGCTAGCGATGATGGAGGAGAGCGAACTGGATATCGAGGAGGATTCATCTTCCCAATCGTCCAACAAAGAACAGGGTTCCGGTACTGATGTCGCTCAATGTATCAGATGTAAAAAACTCTTCAAGCCTTCCTCCTCGGGCAATCCGGCACCATCCAGCAGTCAAGACAATGAACAACGTAAGCCCCTGCTGTGCGACAACTGCGAGAGTGTCGCTGGTCCGAAGATGCGCCGTCGTGGTCCCGTCGGCAACGGTCAGCTCAGCGACGACGAATCAAGCGACTCTCAGTCAACCTCGGCCCAGACGCTCACGCTTGCCTGTAAAATGTGTCCTGAGACCTTCCCCAGCGTTATCGAGTTGAAGTCGCACAAACGCGCTGTACATGGAAAACAGGGAGCCGAGCACATGTACTCATGCGACATTTGTACGAAGACATTCGCCGCGCCTCGCATGCTCGAGAAACACAAGAAGATCCATCGCGAGAGTGTACTCGACGAATCGGCAAAGGACGAGGCGAACCGCAGCATCATCCAGAACTCCGGCGACAACAGCAAAGACAGCGAGGCGAACGACTCGTTAAACGACAAAGTGAACTCGTCCAATCGAAGGGATTCGTCAGACAGCAGTGGCGCCGGCTCCAAGGAACCCGAGGAGCAGCTGCTCGACTGCAGCTTCTGCGAGGAGGTTTGTTCATCGAAAGTGAGCCTGAAAAACCATCTGAAGCGCGAGCACGGTCGTCGCGCGTCCATCTGCCAGTTCTGCAACGGCCTACTTATCGACACGAGCGAGGTGCGCCACATGCTCGACTACCACATCGTCCCGAGCAAAACCAGTACGCGCCAAACAGTTGTACGAAATAATGGGAACGTCCTCCATTGTGGTGACAGTTGCATGCAAGAGGACGTCGACGAGCTGATACGAACTCTGGGCAAGCATAGGTTACAGTCGCTGATGGTGTATCACGACTTCGAGGGCAAGTGCAACAATGCTATCATGAGGTGTCCGATATGTCCGGAGCTCTTCGCGACCCGAGAGTCTTGTCGCTTCCACTACGTCTGGATACACGATGACAATTGTTTACTGTGCGATGAGACCTTCAGGTCAGGTAGCAGCGCTTGCCAGCACAAAGTCGACGCGCACACTTCAACCGCGAGCTACCTTTGGTGCATACAGCGCCTCGTCACCGCCATCGTCAACACGCTGAACCTCGACCCCGATCAGCCCTCGCACGTGCTTTACCAAGTCTTGGCCATGCGTctcgacgacgaggaggaggaggcaagGATCGCCAGCGAGTCGACAGTGAGAGACGTCGCTGAAAAGGGGACCAATGAAGAAGCACCGAGCGCTACAGAGAGATTCCTCGAGGAGGTGCTCAGCGAGGATCAGCTCCCTGACTCGGGCAACATGATTGAGGTGGTGATCGGTAGAGAGGACTCCGAGGATGATCTGCTCTCGATGCTGAATCTCTCGCCGAACTACGAAACGTGCGAGCAGCTACCGAATGCAAGCGCCGCACCGCccgaggaagaggaggaggaggaagagacGCCGGCGCCGCTAACGAGTCCCTCGGTGACGACGTCTTCAGTGATAGTCTCCGTGCCGACGACGCCTACGACTGCTGCGTCCACGTCACTGACGACGACGGTATCAACACCGATCGCTCCTTCGCCCACTACAGTGACAACTGCGAGCCCCGTCCTCGGAAATTACTGCGCCTCGGGCGTTTATCTGTGTAAGCACAGTGACGGCGACGAGCAGTTCGTGCTTGTCGTCGCCGGCGAAGACGAAACCACCTACAAGAACGACATCGGAAGTCTCGCGGTGAGGATCAGCGAAACCTGCGAAGTGTTCACCCTTGAAGAGATCACTGAGATGCTCAGGGTCCACTTCGCGAACCTGACTCAGAACAGCGACGGAGGTGCGTGA
- Protein Sequence
- MHSEAIAKDSAKLADHNLSPAASEKSLKVHAKSDKDSPKIVQSEGESLTEAKGLVNSIKSFNEHNDTCTDILQVSIDVNNESQPNNNKDICSDSHKNKITEDTKTTIAVEIATDTISNQQTTLINKNDSVCEEQLTRCSKRVSLRAFRKVKENKPVVITDSSSVCTIKQTLEKEENLSKTLNENKVDAAVVSNPVNEDIVTELTNDKLISTQDVTEENLKSNVPKIVDHINISSSSLDDIEKLTPNSQNSNEKVLQSASGDTNTTIAEGSADKLNKSASTELQDVNKTTAKVTDLIVNQENANEDFPSDQGSNEVYSENSFTSALDEMVTNEFDTFTETSGPIEEHEVNALNNLQIPQLDSLCSAEALPADTVEEPLEKVLDNLELPSSESLNSFKIPSFETSNLELAIETALENVASKTCSKALETTTEKTSESEENSAKKRRLATLLELKRKCTENLDKKQAVDYQNQLKEAIDALIASGSLDSIDPSSDSCLGNATENEENFESLSDEFDDENLANRPANHGVQKVPSLVTEQGSSSAFDEGNEKAKSTPKMNRSFLEMNSMTCTFCDRCFISHRELKKHVKVQHRQRLVIKITKTDSNKHKTQIVGPAENAALEQESPLVAEVDAIPPNERFPMIADEETITDGEIKIIVKKESGSKNSHVVKEIKITPKSSDGGSSIRIPGFSPALSDVSAGGSSVNSPAVEAAGTTVKRSRGRPRKYPIFTETEIMAKTMAAQVMVQEEDRLKRQQELHSAPIFEPVESIIPPFEDRTKPKAVVVELPEVPAERAKRKRKLRVFDNEDTEEDELPPVPVRPKKRRGRPPRKRPEQLLQELTEKMQQANQSQNSQQAQAQPPSISLSLQEKPAEKPPKEQPASQEPTKLLITDERLHQRVPPQPLSRPMPALVPTSVPVRITNSLPLPLLTTSLTPTLRPTSIPPTKQMPIPPLIQTSIPPLRQTPVPLLIPSLAPTLSMPSLAPLSPTPAPSPSPAPIPAPPEAGPDSDEKRRKLVESLQEFIVIAPEEKKRRMEGELGQEEMEDEAAAPESPDATDVSKPEKGLLTRKFGMTKELVVRLTKIDTVPKDCEDFNGDVDDSERIDGDPTASSDERLRRKLNTKLPCEEEEEEESSREAISSVVRMSLRRKLENNNNHVNGVEKCLTGSPTTQPGDSQAPAAATSDGAKKQLDSAAAQQEATSKNVQQSSRSQFMPQMQYQVHSQSQAQQPVQTQSQPVPQLQQPQQFCILFIPDYDGNGPRDVAPTATIVNFQPVPDNEIHNKPLIYMPTTPTKISVDDHAKAYVCANCTKVLDLIGRLEASVGMTEEDKSAITCPYCSNHFQSLFYLEYHVMHEHLKCENEKQCRHSRVNSLRIPTHEVATEFENYITFALKCRSCYDIFGNVLALNDHVMHKHKTLVRLRPSVTATSGLNAYPVPFVGKNGAIGAVLQCPSDCVCRIGIRSTDTPLQRQQMLKRCPNAMRRLEKIEPAAYEVYTCTLCKSTFLMKDEVVDHLMKMHEVSCKFPCYTCLTSFRSLQIQESHRCSETTLQDFDKLLNIAILPTNVGGKEHNNKFLEREDSSTDEYGAMKTTSPRAPPASNVTSTAPVKNGLKRKNGATIAALSQLLNKKPKLTNTASQPAAQNKRKRKRACPKCKKRFAYRKSLHDHVIYEHIMKGESADGPKKTAVELLMLLSNNRANYKRIEELAEMLNGYTDEDGVSLRKLAMMEESELDIEEDSSSQSSNKEQGSGTDVAQCIRCKKLFKPSSSGNPAPSSSQDNEQRKPLLCDNCESVAGPKMRRRGPVGNGQLSDDESSDSQSTSAQTLTLACKMCPETFPSVIELKSHKRAVHGKQGAEHMYSCDICTKTFAAPRMLEKHKKIHRESVLDESAKDEANRSIIQNSGDNSKDSEANDSLNDKVNSSNRRDSSDSSGAGSKEPEEQLLDCSFCEEVCSSKVSLKNHLKREHGRRASICQFCNGLLIDTSEVRHMLDYHIVPSKTSTRQTVVRNNGNVLHCGDSCMQEDVDELIRTLGKHRLQSLMVYHDFEGKCNNAIMRCPICPELFATRESCRFHYVWIHDDNCLLCDETFRSGSSACQHKVDAHTSTASYLWCIQRLVTAIVNTLNLDPDQPSHVLYQVLAMRLDDEEEEARIASESTVRDVAEKGTNEEAPSATERFLEEVLSEDQLPDSGNMIEVVIGREDSEDDLLSMLNLSPNYETCEQLPNASAAPPEEEEEEEETPAPLTSPSVTTSSVIVSVPTTPTTAASTSLTTTVSTPIAPSPTTVTTASPVLGNYCASGVYLCKHSDGDEQFVLVVAGEDETTYKNDIGSLAVRISETCEVFTLEEITEMLRVHFANLTQNSDGGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -