Sque003446.1
Basic Information
- Insect
- Sycophila quercilanae
- Gene Symbol
- Hmt4-20
- Assembly
- GCA_035582995.1
- Location
- JAWWEP010000022.1:1878987-1886101[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0049 0.55 11.5 1.2 7 23 357 373 357 373 0.97 2 11 5.1e-05 0.0058 17.8 6.7 1 23 379 401 379 401 0.97 3 11 1.6e-05 0.0018 19.4 5.8 1 23 407 429 407 429 0.98 4 11 4.2e-07 4.8e-05 24.3 2.9 1 23 435 457 435 457 0.98 5 11 6.3e-06 0.00071 20.6 7.8 1 23 463 485 463 485 0.98 6 11 2e-05 0.0022 19.1 9.1 1 23 491 513 491 513 0.98 7 11 2.6e-05 0.0029 18.7 7.5 1 23 519 541 519 541 0.98 8 11 0.00074 0.083 14.1 8.8 1 21 547 567 547 569 0.94 9 11 9.5e-06 0.0011 20.1 0.4 1 23 575 597 575 597 0.98 10 11 0.023 2.6 9.4 4.5 1 23 607 629 607 629 0.98 11 11 3.7e-07 4.2e-05 24.5 1.3 1 23 635 657 635 657 0.97
Sequence Information
- Coding Sequence
- ATGGTGGTCGACTGCTTATCAAATCAGAGCTCAGGAGGGCGGAAGCAGGAGCGAAGGTTGGGTGGCTCCGTCAATTCCAGGTTACAGCCCAATGTCACAGCAGCGGGTGGTATGACACCTAAAGAGCTCTGTGATAATGATGATCTGGCAACCTCGCTTGTGCTTGATACCTATCTAGGATTCACTACgcataaaatgaatattaggTACAGACCATTAAAAGCTAACAAAGAtgaacttaaaaaagtaatcattGAGTTTGTTCAGtctcaaaattatgaaaaaacataCAAGAAGTTAATTAGTGGAGATTGGGGAGCTCGACTACCACATACTAAGTCGAAACAGcagcaaaataatttagagaAACATatttatcgATATCTGAGGGTATTTGATAAGGATTCAGGTTTCGTTATTAAGCCTTGCTATAGGTACTCTCTAGAAGGTCAAAAGGGAGCAAAAATATGTGCAACTAGAAAAtggtttaaaaatgataaaattccTTGCCTTGTAGGTTGCATAGCGGAATTAAGTGATAAAgaGGAAGCTGCTCTCTTACATCcaggaaaaaatgatttctcaGTAATGTTTagttgtagaaaaaattgtgcTCAACTTTGGTTAGGTCCAGCAGCTTACATTAACCATGATTGTAGAGCAAATTGCAagtTTGTGGCTACTGGTCGAGATACTGCTTGTGTCAAGGTTTTACGTGATATTGAAGCAGGAGAGGAAATCACTTGTTTCTAtggagaagatttttttggAGATGGTAATTGCTACTGTGAGTGCGAAACTTGTGAAAGACGTGGCACAGGAGCTTTTGCCAACCAAAAACCTGGAGAAGAATTAGAATCaggTTATCGATTAAGAGAAACAGATAATCGTATAAACCGCACTAAGCACAGACAACAGCCTCTTGGTACTAACAAGCAGCAAGAAAGTACTCTTACAGAAAGAAATGGAGAAATTAGTAATACTGCAGTTGCACCTCAGTCACTCAGTATGAAAGAATTAAAGCGGAAAGGCCTTACAAAGTACGACGCTGAGCTCTTGATTGCTCAAGGCAAATCGTTCACGCGCAAAGAGCACTTCACGAATCACATAATGTGGCACACGGGCGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACGCGCAAGGAGCATCTGCTGAACCACGTCCGACAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCCTTCCGCTGCCAGTACTGTCCGAAAGCGTTTACGCGGAAGGACCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCCTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAGTCGCCCCACCGCTGCCACTTCTGCTCCAAGTCCTTCACCCGCAAGGAACACTTGACGAATCACGTGCGCATACACACCGGCGAGTCGCCCCATCGCTGCGAGTTCTGCCAGCGCACCTTCACGCGCAAGGAACACCTGAATAATCACCTCAGGCAGCACACCGGCGACTCGTCGCACTGCTGCAACGTATGCTCCAAGCCTTTCACGCGCAAGGAGCACCTGATCAATCACATGCGCTGCCACACGGGCGAGCGTCCGTTCGTCTGTACCGAGTGCGGCAAGAGTTTTCCGCTGAAGGGTAATCTGCTCTTCCACATGCGCTCGCATAACAAGGGCAGCCAGGCCGAGCGGCCGTTCCGCTGCGACCTCTGCCCCAAGGACTTCATGTGCAAGGGCCACTTGGTGTCGCACCGGCGCTCCCATTCGGACGAGCGACCCCACAGTTGTCCCGACTGTGGCAAAACCTTCGTTGAGAAGGGCAACATGCTGCGCCACCTGCGTAAGCACGCGGCAGAGGGTCCACCTACGCAGGTCAGCAGCGCAGCCTCCGCCCTGGTCGGGCAGCAGGCAGCCGCTGCGGCTGCGGCTGGCGCGCCCAGCTTGCCTATAcccacggcggcggcggccgcggccgCGGTCCTCGTTGGCCATCCCCTCGCACCGCCACCTGCCCCCGCAGTCGGCCTGCCTCAGCACACAGTCGTCGTGCCCACCCCGCCCGGCGTCCTCGCCTCTTACTGA
- Protein Sequence
- MVVDCLSNQSSGGRKQERRLGGSVNSRLQPNVTAAGGMTPKELCDNDDLATSLVLDTYLGFTTHKMNIRYRPLKANKDELKKVIIEFVQSQNYEKTYKKLISGDWGARLPHTKSKQQQNNLEKHIYRYLRVFDKDSGFVIKPCYRYSLEGQKGAKICATRKWFKNDKIPCLVGCIAELSDKEEAALLHPGKNDFSVMFSCRKNCAQLWLGPAAYINHDCRANCKFVATGRDTACVKVLRDIEAGEEITCFYGEDFFGDGNCYCECETCERRGTGAFANQKPGEELESGYRLRETDNRINRTKHRQQPLGTNKQQESTLTERNGEISNTAVAPQSLSMKELKRKGLTKYDAELLIAQGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSSAASALVGQQAAAAAAAGAPSLPIPTAAAAAAAVLVGHPLAPPPAPAVGLPQHTVVVPTPPGVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -