Sque001643.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sycophila quercilanae
Gene Symbol
-
Assembly
GCA_035582995.1
Location
JAWWEP010000009.1:1992187-1995127[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.011 1.2 10.4 0.4 3 22 8 28 6 28 0.85
2 14 1.6 1.8e+02 3.6 0.0 2 20 34 52 33 53 0.92
3 14 0.12 13 7.2 0.4 1 12 235 246 235 254 0.87
4 14 0.094 11 7.5 0.7 1 20 377 396 377 398 0.94
5 14 1.3e-06 0.00014 22.8 0.4 2 23 403 424 402 424 0.98
6 14 0.032 3.6 9.0 2.4 1 23 435 457 435 457 0.95
7 14 0.035 4 8.8 0.1 1 23 476 497 476 497 0.94
8 14 0.004 0.46 11.8 0.0 2 23 503 524 502 524 0.95
9 14 5.7e-05 0.0064 17.6 4.8 1 23 586 608 586 608 0.99
10 14 6.9e-06 0.00078 20.5 5.0 1 23 614 636 614 636 0.98
11 14 0.00015 0.017 16.3 4.6 1 23 642 664 642 664 0.98
12 14 1.7e-06 0.00019 22.4 0.8 1 23 670 692 670 692 0.98
13 14 7.8e-05 0.0088 17.2 0.2 1 23 696 718 696 718 0.99
14 14 0.00041 0.046 14.9 0.1 1 23 726 748 726 748 0.97

Sequence Information

Coding Sequence
ATGGGCTCAATCAGCTTGATGTGTCCTATGTGCTGTGGAGAGACTTTCAATAACTCAGAGTCTCTCAAATATCATTTATTGACTATGACGGACAATTTATACTGCCCCGGTTGTTCTTTAAGGACTTATTCTATAGCTGCATTGATTCAGCATTTAGATTGTTGTGGAAAGGAGAATGAATTGGAAGAACGCGGACCCAAAGATATAGAATTTCAATCAAACAAAATGAATACTCAAGATAAAGATACTCCAGCAATTTTAATGGATGAAAACGATGAAGGAATTAGCAACAGTATTAACGATAGTTTTTTGGCAACTGTTAATGAAGAAGGAATAATGATTGTAGGCGAAGGAAGAACTATTCAAGTTGATGAAAATGGAGATATTCAAGTATTAGAGAAAGCTACTCCAATAAGTGAAGAACCTATGGATATTGTCACTAAAGATATAGTAGATTcaatagaagaagaaaatcaaatttccaCATCTTCTGATCTATTAGATCgtgaaaatatagttttaactTTAGAAAAGGAAAACAGTATGCCAAATATCACAGATACTtctgaattattaaatgaagatGATACATTGATTACATTATCTCAAGTTGATGAATCCCAATTCAGTGATAgtgaatttcttaaaataaaacaagaatcTCAAATCACAGAAACAGAACAGgAAGAAACAGAGTTAATGTACAGCTGCAGTACTTGTGGTTACAGCTTTAATTCTGTATTAGAACATATAAAAGAACATCATGATGGACAAGAAGTAGTACTAGAAATGGCTGAACagcaaataaatgaaatagaatCATCGGCTGGGAATGCAGCACTTCCATCTGTTGCAATATCAAATGCACCTATTGAATCAATCAACAATGTTGTTCAGGTACCAGCTCCAACAAAACAAAGACAATCAATGAATACACTAAGAACTGAAGAATGTGTAGACAGCGATGGAAGAGTGTATACAAGAAAAGTTGTACAAATTGAAAGGTTTTGGGATCGAACTCCAGTTACCTTATCTACAACAAAGGCACCTATgatagagaaatttttttcaaatgtagaAGGAGTTaagGTTAGAGATAAAAGTGTTACAGTAGCTCCAACAAAAATGTACAGATGCAATCAGTGTTTAGAACAGTTTGCAAAATTGGGTGACTTCAGAATTCATGTGTGCCTCCAAGGAAGTAATAAGTGTGACCAATGTGATCAGTCTTTTGCAACTGCAAAAGCTCTCCAAGTGCACATGAAGACGCACGAAAATAGTGATTTTCcttctcaaaaaatatttttatgtactgtATGTGGTACAGAATTTCTAACTCACAAGAGCCTCCGGTTGCATTCGAGAATGCACAATCCCGTACGAGCACGACACGTCGATGCTCCTGAGGGAACGGAAGAAGAAACCTTCGTTTGCAACGAATgcgGTACAACGCTTTCGGAATCATACAGGACAGCACATATGGCTCTGCATGCTGGTGACACGATTACATGTGCGGTGTGTAATCGGAAGTTTGATTCAGCCGAAAGTCTGGCAATGCACGCGGCGGTGCATACTGAACCGAACATCAGTTCACCAAATTCATCTGTAACCACAACTGCCACAGATCCAACCGTCATTGCTACTCAGGATATTTCGGAGTCGACGTTTGTCAGTTCCAGTAATACTGCAACCACGAATTCCCAGTCGAACTCGGTAAACGCTACCGAATCTGTAGACATTCAAATACAGAAGCCTTATCAATGTCAACACTGTGGACGCCGGTTCACGAGGCCTCATGAAAAAGTCAAACATGAAAGAATACATACCGGCGAAAAACCTCACTCTTGTGAGgtTTGTGGAAAGAAATTCCGAGTATCCTATTGTTTGACGCTGCATATGCGAACGCACACGGGAGTGCGACCCTACGAGTGTCAACATTGTGGCAAACGATTTAAAGCCTCCTCGGTGTATAACCACCATCTATTGACTCACGGCGAGGAACGTGCGTACACATGCCCTTACTGTCCAAAGACTTTTAAGACACGAGTGCAGCTAGCCGGTCACAAGAATAGCCATACAAAACCGTTCCGCTGCACCGAGTGTTCGCGGCCGTTTGCCTCGCTTTATGCAGCACGCGCTCACATCAAAACTCATCAGAAAGACAATAACCTCAAGTTCAGTTGTAATGTTTGTGGTGCTTCGTATGGGCGAGCTTTTGCCCTTAAGGATCACGTGAAACAGCACGAAAACGAAGGTATTACAATGCCGCCTGAACCTACACGCGAAGAGGAGGTTCAGGAGATAGAAAGCTATTTGATACCTGAAGAAGAGGTTGATGATGAGGAACTTATTGTGCCCTCTCCACCTCCTTCCATGGAAACCGATCttgattaa
Protein Sequence
MGSISLMCPMCCGETFNNSESLKYHLLTMTDNLYCPGCSLRTYSIAALIQHLDCCGKENELEERGPKDIEFQSNKMNTQDKDTPAILMDENDEGISNSINDSFLATVNEEGIMIVGEGRTIQVDENGDIQVLEKATPISEEPMDIVTKDIVDSIEEENQISTSSDLLDRENIVLTLEKENSMPNITDTSELLNEDDTLITLSQVDESQFSDSEFLKIKQESQITETEQEETELMYSCSTCGYSFNSVLEHIKEHHDGQEVVLEMAEQQINEIESSAGNAALPSVAISNAPIESINNVVQVPAPTKQRQSMNTLRTEECVDSDGRVYTRKVVQIERFWDRTPVTLSTTKAPMIEKFFSNVEGVKVRDKSVTVAPTKMYRCNQCLEQFAKLGDFRIHVCLQGSNKCDQCDQSFATAKALQVHMKTHENSDFPSQKIFLCTVCGTEFLTHKSLRLHSRMHNPVRARHVDAPEGTEEETFVCNECGTTLSESYRTAHMALHAGDTITCAVCNRKFDSAESLAMHAAVHTEPNISSPNSSVTTTATDPTVIATQDISESTFVSSSNTATTNSQSNSVNATESVDIQIQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIKTHQKDNNLKFSCNVCGASYGRAFALKDHVKQHENEGITMPPEPTREEEVQEIESYLIPEEEVDDEELIVPSPPPSMETDLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00714591;
90% Identity
iTF_01381528;
80% Identity
-