Sque004328.1
Basic Information
- Insect
- Sycophila quercilanae
- Gene Symbol
- -
- Assembly
- GCA_035582995.1
- Location
- JAWWEP010000022.1:14724840-14729962[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.0034 0.38 12.0 0.2 1 20 108 127 108 128 0.95 2 32 0.0013 0.15 13.3 2.8 1 21 146 166 146 167 0.94 3 32 9.2e-05 0.01 17.0 0.5 2 23 207 229 206 229 0.94 4 32 0.032 3.6 8.9 0.5 1 23 233 256 233 256 0.92 5 32 0.0077 0.87 10.9 3.7 3 23 264 284 263 284 0.97 6 32 0.0012 0.14 13.4 0.7 2 23 292 314 291 314 0.94 7 32 0.00025 0.029 15.6 2.3 1 23 324 346 324 346 0.98 8 32 0.064 7.3 8.0 0.3 2 23 353 373 352 373 0.96 9 32 1.7e-05 0.0019 19.3 0.9 3 23 381 401 380 401 0.97 10 32 6.1e-05 0.0069 17.5 4.8 1 23 407 429 407 430 0.96 11 32 0.00012 0.013 16.6 1.4 2 23 537 558 536 558 0.96 12 32 4.7e-06 0.00053 21.0 2.5 1 23 564 586 564 586 0.98 13 32 1.9e-05 0.0022 19.1 0.6 1 23 592 614 592 614 0.97 14 32 3.6e-05 0.0041 18.2 0.2 2 23 621 643 621 643 0.96 15 32 0.0038 0.43 11.9 2.2 1 23 648 670 648 670 0.97 16 32 1.1e-05 0.0013 19.8 0.8 1 23 679 701 679 701 0.98 17 32 5.8e-06 0.00065 20.7 0.4 1 23 707 729 707 729 0.97 18 32 8.7e-05 0.0098 17.0 0.7 2 23 736 757 735 757 0.97 19 32 1.6e-05 0.0018 19.3 1.1 3 23 765 785 763 785 0.97 20 32 0.00023 0.026 15.7 0.1 1 23 791 813 791 813 0.97 21 32 1 1.1e+02 4.3 0.0 1 23 869 892 869 892 0.94 22 32 0.00066 0.074 14.3 2.0 2 23 898 919 897 919 0.97 23 32 3.5e-05 0.004 18.3 7.5 1 23 935 957 935 957 0.98 24 32 0.0005 0.057 14.6 3.7 3 23 964 984 962 984 0.97 25 32 0.0034 0.38 12.0 0.1 1 23 989 1011 989 1011 0.98 26 32 8.6e-07 9.7e-05 23.3 2.2 1 23 1019 1041 1019 1041 0.98 27 32 1.3 1.5e+02 3.9 4.2 1 23 1047 1070 1047 1070 0.93 28 32 0.00046 0.052 14.8 0.4 3 23 1083 1103 1081 1103 0.96 29 32 1.2e-05 0.0014 19.7 2.0 1 23 1109 1131 1109 1131 0.96 30 32 6.2e-08 7e-06 26.9 0.2 1 23 1137 1159 1137 1159 0.98 31 32 4.8e-07 5.5e-05 24.1 0.9 1 23 1165 1187 1165 1187 0.98 32 32 0.0011 0.12 13.6 1.7 1 21 1193 1213 1193 1214 0.96
Sequence Information
- Coding Sequence
- ATGTCTACCGACCTGATCGTTCAAATCTGGGAGCAAAAGCGCAAGCGGTCTAAAGTCCCCGTCATCCTGCAGCGCAAGCGATGTGCCGCTAAGTCTGAATTGCAAGAGACAGTCATGCCGGTGTTCGACGTCGGCCAGACCTCCATTCACACGATTCTGCAAAAGAACGTATTTTTGGTGAACTCGATCGACTGCAACAGAGAACTCTTCAAAATCGAGGAGGCAGACGTGGAAGAACAGACGTTCGAAGAGGATCAGACAAAGAGAATCGGCTTAAGGCGTTCGTCGAGGATCAGACGAAGCGAATCGACTCCAGAAGAGTTCGAATGCGACTCGTGCGAGGAGACCTTCGATAACCGGTCATCCCTCATCATCCACAAGACAGAAAATTCGATCAGGCGCACGCGGGAGGCACTACGACAACCCGAGCTGAAATACGAGTGCGACCGCTGTAAACGTTTTTTCGCTCGCAAAGGCTCCCTTGTGCGCCATCATCACACCTGCAGCGCCTCCAACGAGGCAGCGGAAGAGCGTCCTACGATCCGCCGGCGCCGCTGCGCCAGAAAATCCGCGGAGGAGCACGGCGGCAGTGGCACCACCCTCACCGAAACTCCCGTTTCCTGCGACGCATGCGGCAAGATGTTTAAGAAGCGGAAGTACCTGAAAGCCCACCAAATGCTGGCGCACGCGGAGGAGCACGCGTGCCTCATATGCGACGAGCGCTTCGACGCCGTGAGCAAGCTCAGGCTGCACATGACCGAGCGTCACAGCGACGACTACTCCGAGTTCTGTCAGATCTGCCACAAGGGCTTCCACTCGCGCCAGTCGCTCAAGGTCCACGTGGCGTCACACGCCCGCGACTCCCAGATCTGGGAGTGCGAGCTCTGCGCCAAGAGGTTCCGTCACGAGGTCTACCTGCGAAAACACGTGCAGCTGGTGCATGTTGAGCGCATGGACCGCAAGACGACATTCTCTTGCGAGATATGCGGCTACACCACAACTTACAAGAACTCCTTCCGCGAGCACATGTACAAACACACGGGGGAGGACGTCGTCGAGTGTGATGTGTGCGGCAAGCGCATGCGGAAAGCTTACCTCAGGATGCACTCGAGAATTCACACTGGTGAAAAGCCCGAGATCTGCGAGTACTGCGGCAAGAGCTTCAGCGCGAGGAAGTACCTCACGAAGCATAGAGTCACTCATACTGGCGAGAAGCCCTACCAGTGCAAGCTCTGCGGACGGAGGTACACGCAGCGAGGTACCCTCACCTTGCACTTTCGAAAGCACCACCCGACGGAGGCTAAAAATGGCGAGTGTCCAATCGCAGACAGGAGAAAAGACGATGCTGGTCTGATCGTAGAAGTCTACGCTGAGAGTGAGCAGGGAAAGGATGACGAGGTTGTCGATGATAAAACTACTGGTGATATCGCAGCTGATGATATTAATAATCAGCTAGAGAGTCACTTCGAAATAGTCGAGGAAGATCTTGTTGATGAAACTTATCATATCAAGTCCGCTGTCGACTCTGAAACTTTCCGCTCCGGCGCACGATACTCCCCGCAAAAGGATCCAATCCCCGTCTCCCCATCACGGCAGGCCGACGGTATCGAGTGTCCCCACTGCTCGCGCCGCTTCAAGTCGAAGAGCCTGTTCGAGGGTCACCTGATATCCCACAGCGACGCTCGCCCCCACCGCTGCGAAGTCTGCGACAAGCGCTTCAAGCGCAGCAATACGCTGGCGGTGCACCGGCGCATTCACACGCTGGACCGGCGTCACGTCTGCGACTTGTGCGGACGGGGCTTCGTGCAGGCCTCGCAGCTCGGCAcccaccgccgccgccacctCGAGCGCTACGTCGGCCGCTGCGCCCAGTGCGGCAAGGGCTTCGTCACCCAGGCGGAGCTCCGCGGCCACATGAACTCGCGCCACGGCGCCCGCGAACACGTGTGCTCGATCTGCGCCCGGCCCTGCCCCACGAGGCACGCGCTCGCCCGCCACGCTCGCTCCCACGACCCGGACTTCCGCCCGGCGAAGCATCAGTGCGAGATCTGCGGCAAGACCTTCGCCTTCAGGAACTCGCTGGTGGCCCACGCAAAGTCGCACACCGGCGAGAACAGGCACGAGTGCCCCACCTGCGGCAAGGCACTGGCTTCCAAGTCCTCGCTGCAGGACCACTTGCGACTGCACGGCGCCGAGAAGAGCCTCGTCTGCGAGGTCTGCGGCAAAGCCTTTCACAAGAGGACGACCCTGGTGGTGCACCGACGCGTGCACACCGGCGAGAAGCCCTACGGCTGCGACATCTGCGACAAGGCGTTCACGCAGCACTCCACCCTCGTCATCCACCGGCGGTATCACACCGGCCAGAGGCCGTATCAGTGCGCCCAGTGCGGCAAGTCCTTCGTGTCCAGGGCCGTGCTCAATGGACACGGCAAGGTGCACGCGAACGGATTGCTTGAAGCGGCCAACCCGCCGAGTCCCGCGATAATCACGAAGAAGAAGCAGCAGATGCGGAAGCTCGAGAGCGAATCGTCGCTCGCGACGAAAGTCATAGAGCCGAAGGTGGAGCCGAGCCTATCAGCCGACTTCGAGGACCTACCGCTGGCCTACATCTGCAAGCCCTGCGTAGTGCCGTTCGCCTCGCAGGAGCTCCTGGACGCGCATGTCGCCACGCAGCACAAGAGAGGCCGGACCGAGTGCGCGCAATGCGGCCGCGTCTGCAGGAGCCTCGCGAGTCTGCGGCAGCACACCAAGCGGCACAAGACCGAGGCCAGGAAAAAATCGCCGGCGCGGCGAGATCCTACGTTCAGCTGCAACAGCTGCGACAAGGTATTCCGCCACCGGAGCAACTACCACAAGCACATGCTACGCCACACCGTCGGCGACCTCGCCTGCAAGCACTGCCCCAAGAAGTTCCGGCTGTTCCGCGACCTCACGCGCCACGAGAAAACCCACTTCCTGCCGAGCTACATGTGCAACGAGTGCGACTACGAGACGACGGTGCTCGCGGCCCTCAGCATCCACATGACCAGGCACACCGACAAGGCCGAAATGCCTTACAAGTGCCACGACTGCAACAAGAGTTTTCGCAAGGCCGCCGAGCTTCAGGAACACTACAACATTCACTCCGGCGAGAAGCCGTTCGCCTGCAAGGTGTGCTCGACTGCCTTTCACCTGAGGCGCCAGCTCTCGGCGCACTGCCGACGCCTGCATCCGGAGCTGAAAGCTCAGAAGGTCACCAGCACGGATTGCGACATCTGCGGACGGGTGCTCGCCACGAAGCGCTCGCTCTTCCGTCATAAGGAGAGCCACAACCCCACGAAACTGTACCTCTGCGACTTCTGCGGGAAGAGCCTCAGCAGCGCTGAGCATCTGAAGAAACACAGGAGGATACACACCGGGGAAAAGCCTTACGTGTGCGACATTTGCGGCAAGGGATTCACCGACTCCGAAAATCTCAGGATGCACCGACGGGTGCACACTGGCGAAAAGCCTTACAAGTGCGATCAGTGCCCGAAAGCCTTTAGTCAGCGATCCACGCTTACTATTCACAGGAGGGGGCACACCGGTGAGAGACCCTACGTCTGCCAGATCTGCCACCGTGGATTCTCCTGCCAGGGCAATCTTACCGCCCATCAGAAGTCCACCTGCGTTTAA
- Protein Sequence
- MSTDLIVQIWEQKRKRSKVPVILQRKRCAAKSELQETVMPVFDVGQTSIHTILQKNVFLVNSIDCNRELFKIEEADVEEQTFEEDQTKRIGLRRSSRIRRSESTPEEFECDSCEETFDNRSSLIIHKTENSIRRTREALRQPELKYECDRCKRFFARKGSLVRHHHTCSASNEAAEERPTIRRRRCARKSAEEHGGSGTTLTETPVSCDACGKMFKKRKYLKAHQMLAHAEEHACLICDERFDAVSKLRLHMTERHSDDYSEFCQICHKGFHSRQSLKVHVASHARDSQIWECELCAKRFRHEVYLRKHVQLVHVERMDRKTTFSCEICGYTTTYKNSFREHMYKHTGEDVVECDVCGKRMRKAYLRMHSRIHTGEKPEICEYCGKSFSARKYLTKHRVTHTGEKPYQCKLCGRRYTQRGTLTLHFRKHHPTEAKNGECPIADRRKDDAGLIVEVYAESEQGKDDEVVDDKTTGDIAADDINNQLESHFEIVEEDLVDETYHIKSAVDSETFRSGARYSPQKDPIPVSPSRQADGIECPHCSRRFKSKSLFEGHLISHSDARPHRCEVCDKRFKRSNTLAVHRRIHTLDRRHVCDLCGRGFVQASQLGTHRRRHLERYVGRCAQCGKGFVTQAELRGHMNSRHGAREHVCSICARPCPTRHALARHARSHDPDFRPAKHQCEICGKTFAFRNSLVAHAKSHTGENRHECPTCGKALASKSSLQDHLRLHGAEKSLVCEVCGKAFHKRTTLVVHRRVHTGEKPYGCDICDKAFTQHSTLVIHRRYHTGQRPYQCAQCGKSFVSRAVLNGHGKVHANGLLEAANPPSPAIITKKKQQMRKLESESSLATKVIEPKVEPSLSADFEDLPLAYICKPCVVPFASQELLDAHVATQHKRGRTECAQCGRVCRSLASLRQHTKRHKTEARKKSPARRDPTFSCNSCDKVFRHRSNYHKHMLRHTVGDLACKHCPKKFRLFRDLTRHEKTHFLPSYMCNECDYETTVLAALSIHMTRHTDKAEMPYKCHDCNKSFRKAAELQEHYNIHSGEKPFACKVCSTAFHLRRQLSAHCRRLHPELKAQKVTSTDCDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -