Sque019739.1
Basic Information
- Insect
- Sycophila quercilanae
- Gene Symbol
- -
- Assembly
- GCA_035582995.1
- Location
- JAWWEP010024233.1:12357-13934[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-08 4.6e-05 23.8 0.0 2 42 15 55 14 58 0.93 2 2 5.9 9e+03 -2.8 0.0 14 19 248 253 245 254 0.85
Sequence Information
- Coding Sequence
- ATGGGAAAAGTTTTAAGGAGAAAACGTGTCATCCCTTACAGCCAGGATGCTATGAACAAGGCATTAAAAGACGTAAAATCAGGAGCTCCATTGAATACAGTTTgcaaaaagtatcaaattcCCAGATCAACTctgcattataaatttatacgtGAACACGTCAAAGACAAGCCTGGTCGAGATCCGGTATTAGACGCTAATGAAGAAGATAAATTAGTAGTTtggattaattttatgtactcCCTTGGTCGACCACTGTCAATAAGCCAAATAACAAACAGCGTTGCCttattagttaaaaagttAGAAAAGCCAACACCTTTCAGTGATGGGCGTCCCGGCAGACACTGGTGCGACGGTTTTTTTCGGCGTCACAAAGGTACGAAGCGTAAAATTcgagaaactgaaaaatttggGAGAGTTTCGCCGAACGAAGGCTCCATAAAAAAGTGGTTTTCAGACATTGGAGAGTGTTTACAGGAAGAAGATCTCATGAATGCAGACCCCTCTAAAGTATTTAACATCGGTGAAGTAAATTGGCCTTTATATTCTAACGTTCTAAATGAATCAGATAATGATTCTTCCGATGAAATCGTTGATCGTGAAAAATTTAGGATATTGATGGCAGGAAACGCGGTGGGCAAATTAGCACCAAAAATggtgatattttataatgaagaggacaaaaaaagacaatataacaattttccaGAAGAAGAGTGGAAAGTTAGTTGGACTCATAATGGCAAAATGTCGGTAgaacttttttatgaatatatagTGTCTCATTTTTATCCTTGGTTAATCAAAAGCGCTATTGAGCCACCGGTTATTTTGTATTTGGACGGATATGTGAATTGTCTGTCGCAATTACTATGCGAATTTTGCAGTAACCATAAAATTGCTTTGGTCGTTTTACCTCCGGGCACTACTCACTTGCTGCAGCCTATCCATGTTGGTTTggctcttaaattaaaaagccgCTGGGGGAAGGCTATAAAGACTTACACGAAGAATAAAAAGGTGTCCATTGTGAATAAAACAGATATTGCAGAGATGTTGATAAAGCTTTTCAGTAGCATAAAAATTGACGAAACTTTAATAAGTAGTTTTCAAACATGTGGATTGTATCCCTTCAGAATAGAAGGAATAGATTTTGTTAAATCACAAAAAACAAGGTCAAAacggaataataaaaagaaagagccgAATACTGCATCAAACTGTCAATCATCGTTAACAGAAGCTATCGAAAGATATATAGAGCCTTCGGTATTGGACACATTTAAATCTGCTCTGTGTAACAACGAATGGACAGGAAACGTAGAGGATAAAAGTCTTTTTAACGTGTGGAAAAGAATAGTGAATAACGACTGTGAGATTAGTGTTGAGAAGAAGATCTTCATTGATACAATCAATATCAAtagtgaaaatgaaattagtgAATCTATTCAAAAGTTGAATAGTTTCCCGAGTGTGTGTActgttttagaaataaataatggttTTATTGAAAACGAAGATGCCTTAAAAcctacgtataaaaatttggaCGAATTagtatacatttataaataa
- Protein Sequence
- MGKVLRRKRVIPYSQDAMNKALKDVKSGAPLNTVCKKYQIPRSTLHYKFIREHVKDKPGRDPVLDANEEDKLVVWINFMYSLGRPLSISQITNSVALLVKKLEKPTPFSDGRPGRHWCDGFFRRHKGTKRKIRETEKFGRVSPNEGSIKKWFSDIGECLQEEDLMNADPSKVFNIGEVNWPLYSNVLNESDNDSSDEIVDREKFRILMAGNAVGKLAPKMVIFYNEEDKKRQYNNFPEEEWKVSWTHNGKMSVELFYEYIVSHFYPWLIKSAIEPPVILYLDGYVNCLSQLLCEFCSNHKIALVVLPPGTTHLLQPIHVGLALKLKSRWGKAIKTYTKNKKVSIVNKTDIAEMLIKLFSSIKIDETLISSFQTCGLYPFRIEGIDFVKSQKTRSKRNNKKKEPNTASNCQSSLTEAIERYIEPSVLDTFKSALCNNEWTGNVEDKSLFNVWKRIVNNDCEISVEKKIFIDTININSENEISESIQKLNSFPSVCTVLEINNGFIENEDALKPTYKNLDELVYIYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -