Sque013039.1
Basic Information
- Insect
- Sycophila quercilanae
- Gene Symbol
- -
- Assembly
- GCA_035582995.1
- Location
- JAWWEP010008432.1:1-2478[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.6e-09 1.5e-05 25.4 0.0 5 36 1 32 1 37 0.89
Sequence Information
- Coding Sequence
- ATGCAAGCTGCTCTCAATGCAATGGGCGAAGGACAGACTTTGCGCCAAGCTGCTAACAATTTTGGAGTACCAAAAAGTActcttttttcaaagttgaaaaatttggtaCCACTTCAGTGTAGGAAGGGCCCAAAAACTGTGCTAAGTGAACAAGATGAGAGAGACATAGAACAGTGGATCTTATTTTGTGGTGATAGTGGTTTCCCTGTAACTAAATCAAGACTTCCTGACTGTGTGCAAAAATATCTGGGTGACAACGCTAAGActccttttaaaaagaatcgaCCTGGACTACACTGGTACCGTGCATTCATGAGAAAGCATCCTAATCTTAGAATTCAAATCGAATCACATGATGCTTCTTCCACTGAACCTTCAGCAATTGATGGACCTTTACTACCTGATGTACCAATGCTAGATGCTTCTGCTTGTCTCGAAAACTTAGAAGGTTTACCTGTCGTCGATacagtaaatgaaaattcatttgaattagATTATCAAGAGACTTCAAGCATCGAAGGAAATATTCAAGCAGATATACCAGCAGTAGAATCTGAAATTGAGTTGCACGATGAACTAGGTAACCGTATAACAGCTAAAGTTATTACAGTAATCGATGGTGACATTATGAGCAAAAGCAACCCTAGTACCTCACAAATTAACACAATTGCTCACAATgacgaagaaaatattttagatactGCA
- Protein Sequence
- MQAALNAMGEGQTLRQAANNFGVPKSTLFSKLKNLVPLQCRKGPKTVLSEQDERDIEQWILFCGDSGFPVTKSRLPDCVQKYLGDNAKTPFKKNRPGLHWYRAFMRKHPNLRIQIESHDASSTEPSAIDGPLLPDVPMLDASACLENLEGLPVVDTVNENSFELDYQETSSIEGNIQADIPAVESEIELHDELGNRITAKVITVIDGDIMSKSNPSTSQINTIAHNDEENILDTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -