Sque011335.1
Basic Information
- Insect
- Sycophila quercilanae
- Gene Symbol
- retn
- Assembly
- GCA_035582995.1
- Location
- JAWWEP010005360.1:1-10929[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-20 2.2e-16 60.7 0.0 18 89 25 94 17 94 0.94 2 2 0.29 1.2e+03 0.6 0.0 30 53 155 181 138 204 0.73
Sequence Information
- Coding Sequence
- ATGACGTCGACCGGCGCGGTCGCCGCCATTTTCCGCCTCGGCCTTATCTGCTCCCTCGGTCTTTATATCCGTACACCGATAAACCGGCTGCCGATCATGGCGAAATCGGTGCTCGACCTCTACGAGCTGTACAATCTGGTGATCGCCCGGGGAGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAAATCATCAAGGGTCTTCACCTCCCGTCGAGCATAACGTCGGCAGCCTTCACACTGCGCACCCAGTACATGAAATACTTGTACCCATACGAGTGCGAGAAGAAGCAGCTGTCGACGCCGGCGGAACTGCAGGCAGCGATCGACGGCAACCGGCGGGAGGGCCGTCGCAGCAACTACGGCGCGTACGGAGGAGGCAGCGGCACCGGCGGTGGCGACAGCCTCGTCCACCAGCGCAGTCCCCACAGCCAGAGCAGCCTGGCCTCGCTCCACGGCCAGATCAACCCCATATCGCTGGTGACGGCAGTGCAGGCTGCAGCCGCGGGCGGCCAGCACCAGGTGCCCAACCCCCAGAACCTCGTCAACGGCAGTGCGGCGCACACACCCCTACCACAGCACCCACACCACCCACATCTCCAGGCCAGCTTCGGAGGCACCCCCAATGCAG
- Protein Sequence
- MTSTGAVAAIFRLGLICSLGLYIRTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKQLSTPAELQAAIDGNRREGRRSNYGAYGGGSGTGGGDSLVHQRSPHSQSSLASLHGQINPISLVTAVQAAAAGGQHQVPNPQNLVNGSAAHTPLPQHPHHPHLQASFGGTPNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -