Sagr022990.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- -
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000044.1:1651171-1660521[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00092 0.12 13.3 1.4 1 23 1165 1188 1165 1188 0.95 2 12 0.0019 0.25 12.3 0.3 2 23 1232 1253 1231 1253 0.97 3 12 0.2 26 5.9 2.2 3 22 1398 1417 1396 1417 0.95 4 12 0.59 75 4.5 0.0 3 23 1438 1458 1436 1458 0.96 5 12 0.088 11 7.1 0.2 1 20 1536 1555 1536 1557 0.93 6 12 0.38 48 5.1 1.7 2 19 1583 1600 1582 1601 0.95 7 12 5.4 6.9e+02 1.4 0.2 2 23 1627 1649 1626 1649 0.93 8 12 0.00054 0.069 14.0 0.3 1 23 1701 1723 1701 1723 0.98 9 12 0.00083 0.11 13.4 1.0 3 23 2027 2047 2025 2047 0.94 10 12 0.36 46 5.1 1.4 1 23 2310 2334 2310 2334 0.98 11 12 0.032 4.1 8.4 0.2 1 23 2417 2442 2417 2442 0.96 12 12 0.13 17 6.5 1.0 1 19 2444 2462 2444 2466 0.91
Sequence Information
- Coding Sequence
- ATGGAGTTGGTGGACAAAACTGGAAAAAATAGAAGCAATGATGACAGTAGACAATTAAAAAGTAATGTTATACCAGAAAATTCAAAAAATGTGTGTGCTCCAAGAAAAAAGTTTTGTAATACAGTATTTGCAACAAAAATGAGAAATCGTAAAAATGTAGATAAATTACAAAAACTTAATACTGAAGAAGTTTTCACATCATGTAAGAAGGCAGTATCAATTGATGTTACGCGCCTCTCATCAAACATTATGCCTAAATTAGTAACTTCAGTAGATCACAAAAATCGTAAAAGGAAAAGATATCAATGGAAGCTTGGAATATTAACAAAAAAATTCAAAAGAAAGAAACCCTGTGATTCAGTCAACATAAATTCGCCTATAAAAGAAAAAGTTATTGAAAATAGTAATGATAATGTTAGTTCAACAAATATTGAAAGTTCTAAAAATTTAGAAAATGAAAATGAAGAAAAAACAATAAAAGTTCAAGATAAATTATATACAGATACTTCAAAAGCAGATTCGCAGAGGAGAAAAAGTAGAAGATACAATATGAATGGCTTGAATGATAAGTTGGATGCTGAACTTCAACCAGATTTTGGGATGCACTTAGAAGACAATTATAGTTGTAGACGAACAGAGCCATTTATTGGTAAACTAAATACTAAAAAAGCTAGATGTCAAAACTTAAATAATATATTAAAATTAGAAATGGAGATTATACAATTGCGAGAAAAAACTAAGATGGAAACTGTTGAAAATAAGAAAACAGATTCAGATGAGAAAAATGAGAGTAAGAATTTAGAAAATAGTGAAGTTTTGGAAAATACTACGATTATTAAAAATAAGAATAAAGAGTCAAATGAAATTACAGAAAGAGATCAAAATATACAAGACTGTGATTCTAAGAAGCATACTACAGTCACAGGAGATAAATATAAAGCTACTGAAAAAATCGAACTGGATAATCAAGAATCCAAAATTTTACCAGTGACAAAATCTATCGAAACCAAAGATGTTACAGTCGAAATAGTAAGTTGTAGACGTACAATGCCATTTGTAGGCAAAACTCCTCGAAAATGTTATAACAACATGTCTGAAGGACTTATACAAGCTGGTTGTTCTAATAGTGATTTAAAAACAAAGGTAGATTCTGCATGTGAAGATATAAATAAAAAATTACATTCTTCATCTATAAATGAAATAGACAATCAAAATTCTTCAAAAGATAATAATGAGTGTCTTGCAAATTCAAATTTGAGTTCTGAATCTTCAGGAAATAATAGTGAAATAAAATCACAAACTGTTGTAATTGAAGCAGTCAAAAGTTCAAATATGAATGAAAAATTGAATGAATCCATGAATAATGTTTGTGAAAAGGAGGTAAATATAAATAATGACACAAATTCAAAATCTGATAATCCATCTAAGAAGGTAGAATCAAAGTCAGATGAAGTTCCCGTTAATGATCCTAAGGAAAACTTTTGGAGTTGCAGAAGAACGAATTCTTATGAAATTAAGGACTCATCTCACTGTAGTAGAACGTTACCGTTTATATCTACAAAAAACAAAAAAAAAGCTTTGAATATTTCAGTATCTACTACAGATTCCTCTAAAATAGAAAATAAAATGCCTGAAAATGTTCCAGATGGATTACTTTTAAATAAAGAAAAAGACTCTACAGATCAACTAGATCAATGTAAAGAGACAAACATTCCAGTAATTCAAGAAGATGCATTGAAGTCTGTTAGCAACACTTGTGATGCAACTGCAAATGAAAGAAGTACTAGTATGGGTAACTTACAAGTAGAAAATGAAGACTGGAAATTTAAAAGAAAGCGTACAATAAATCTATCAGATAATGAAAAGCAGATTGAAAAAGAAAATCCTTCTAAAAAACTAAAAATTAAATCACCTGTAAAAACTATGTTACCTGACAAAAAAAAATCAAATATTGTTGCAGAATCACCAGACAACGCTATTTGTTCATGGATGTCATTTAATTGCACTAAACATACTCATAATCACTTAGACATTAATAATTGTCTGGTATCCAATAATGAAAGCAAAGATGTATGTGTCTCATTATTTAAATTAGAAGATTCAAAAGATCCATTAGTAGTTGATTACCTGAAAAAGACTGAATTTAACTATAAAAGTAAAAAGAATTCATCTTTCCTTATAAAAAATATTGATGAAAGTAGTATACTGGATACAAATTTAGATGATGCAGCTCTACAAAAGCATGAGACCAAAGATCTTCCTACCTTTGTTATACCAGAAATTGTTAACAAAATAAATTCTGATAATGATGAGACTGCAAATATTTTAAATGCTCAAGATAATATTAATGCACAGACTGAAATGGAGAACAGTTATGAATCTGTAAAAGGATCAAAGACTAAAACAAGAAGAAAGACGTTCAGCACGTCTTCAGATTCACTGAATTGTGGGTATAGCAAACGAAAGAAGAATTCTGTAAACTACTTAGAAAACTTTAGCGATTCAGATAGTGAATCATCCAACTCGTTTACAATGTCTTTAAGAACAAGAGCGCAGAGTCGAGGTCCTGTTTTACGCTGTAGGAATAATCTCAGATCTTGCAGTATCGATCAAACAGCTGAAAATGACTTGGAATCTTATAAATCGTTAAATAGTGGTTTAAAGAGAAGAAGAAAAATAGTTTTCGAATCTGATGAAAATGAAACAGACAATGAAAACTCAAAAATAATAGAAACCCTTAAGCAAAATTCTGAAATTAACAACTATAAAATAGATGATTCTCAATCCAAAAGTATTCAGGAAGAAATTGCAAATTTTGTTGAACAAAACATTAAGGAAACATTAGCGATACCAATAAATAATCAGAACAAAAATCAACAAGATAAAAAGAAACAAGATGTTCAACTTATAAAATTAGAAACAGTATGTGAAAGTTTTGAAGATTATTCAGCTAGCGAGATAGAAACTTTGACCGAAAAGTATATTGATTTATTGATGAACTCTAATTTTTCATCGGATACTTGGCGGAAACCCATCAATTACTATAAGTCAAGAAATGAAAAATACACCCATCAAGTTGATGATTCTTTTATACCAAATATTGAAAGTCATGATGTTCATGTGCAGTTTGAAAATTGTGATTCTACAGAAGAAATAGAAAGTGTTATTGTTACTCCTAGTATTGAGTCTTTTATCGACCAAAGTTATATGGATACATCTTCCCCAAATTATTGTATCTCAACAGCGACATCATTAGATACTCAAATTATTGCATTTGTAGAGCATACTGAAAATTCTGAACAAAGGAACTTTGGAGCTGTGAATATTTCAGATGCTTTGAGTGTACCAGCAAATAACGAGAAAGATAAGGAAAAGACAGCAATGGTAAACCAAATAGAAATAAATGAAGAAAATATGAAACAAATAGAAGAAAATCAAATTAATCAATCAGATCTACAGACTGCATCAATTGTAGTTAATGGTCAATTAATGTTCTCTTGCTCAACGTGCAACAAAATATGTGTAAATGAAGACTTACTCAAACAACACATAAAGGATGAGCATGAAAATAGTTTTAAAAGTTTGAATGATGCTATTACCAAAACTGCTGGAAAATCAAATGAAACAGAAATAAGTGAAACAAAAAGGCAATCAGCAAAATATAAAAAGAAACACAGTTATTATGAAAGCCTTAGGTGTACTATATGTTCAGTGCTGTTTGATTCAAAAGAATCACTTTTTGATCATATAATGACTCATAACGAGCATGAACTGCAGGAAGCATATAAAACGGCGAAGGCTAAAGCAAAAAAACATGAAAAGGAAAAGGACAATAGCGTTTCTGAAAACTCAGATAAAGAACAAGAACATGACGTCCATGTTTTGGAAGGTAAAAAGAAGAAAAAGAAAAAAGAAAAAACTAAGAGAAAAAGCACAGAAAGTATAAGAAATAGTCGGTCATCTACAGAAATTGAAGACTTGCCTAAAGACGACACACGATTAACTAGTATTCAAAGAACTTCAATGTCATCTGAACAACATGATCAACAGCAGGATGTCGATTTAGTGGATAATTGTACTGCAGTGCAGGTGATATCGGATACTAGACCTACTGCAAAATCTATAACCATTTGTCCCTGTCACGCACATGAAACGACAAATCAGGATTTACAAATTGAAATGGTGTTATTCTGCAAAACTTGTTATGTGATCTTCCGTAGACGAGAATGCTTTGAAGTGCACTATCGTACTAGTATAGAATGTCGACATAAACGCACTAATAATGAAATAACGAAGGTGCCAAGGCTTTTTTGCAGTGGTTGCCCTTATGTGTTGGGTTCATTGATGGAGATGCGGGCACATCTTGAAATGCATGCAAAACAAAATTGTCAAGGCACTGTTACTTTTATTTGCAATATTTGCAAAGTGGCATTTTATGGTGTTGGTGGCATATTTTATTCTCATTGGTTTAATCATACAAAATCGCCAAACTTTGTTGCCAGTCGTCATTCCTTCCCAAAATTGTCTGTAGTTTCAGTGTTAGAGGACTCGAATGTGGCAATGACAACAACTAAAAGTCAAGAAGGTTTCTTTTACATTGCTGAACACGTTTGTCGACTGTGTAGATTGCCTTTCAATTCTGAGCCCGAGCTTCAAAGACATAAACTTGTTCCTTGTCAAATTCCACAGCTTTCAAGTTTACGCCTTGAAACTCACGAAAATAATCGTCTTCAAATGATCAAACTTATTTGTGATCTCTGTAAGAAGTACTATGTTAACAAGGAAAATTTCGATCGTCACTGCATCGAGCGCAATCATCTTAAAACACCTATTGCGAAATTTTCTCGCTTACCCATTAATATTAATGAACAAACTTTAGTATGTAGTCTCTGTAAAGTTGCCAATAATACACTTGACAATATGAAAGAACATTGGAAACGCATACACAGTCCTATTATGGAACTTTATACGTGCAAAACATGTAACATTGTTCCTTCCAATGATGTTACAAATTATACTTACGACAAATTTGAGAAGCATTGTCGTTTATTTCATAAAAGTGAAGTCATTACTTGTTTGGTGTATTTTGTAACTGCTAGATACGTTTGTAACATTTGTAGGTTTGGGTTTGAAACGGAAAAATCGTTGAAGGACCATCAAATTGTGCATCAGAAAAAATCTAATGCCCCAGCTATTTCTAATATTCCAACAAATTCAATATCTGCTAATACTCCAATGATTTCAGCCCTTACTTCAATTCTCTGTGATCCTCAATTAAATAATGCAGTCAATAGTAGGCATGCAGCATATGTGCCAAATTCTTGTGTTCAACCAAACTCTGATGTACAGATGTCAACATCATCTTACATAGAAACTCCGACAGAAAATTTCAGTTCAGATCTTGGAAATACAAATGAAATGATAAATATGTCTTCTAGTACAATTACACCTGCTAGATCTGTGGAAATTGCATCTTTGACCAATAGCAGTAATGCAAATACTTTGTTACGTAGCATGCTAGTACCAGTAGTTGAAGATCAGTCACCACAATTGAATCAAATTCAACCAAGTGTTGAAACAATACTAATAGATTCAAGATCCAATAGTCCAGTTATGGATAAAAGAACCTCTGATAATGATAATCTCGCAAGAACCAATGAAAGCACAGTCGATCCACCCATTGTTCCCCAGAAATCCTATATGACAAAGGTGAATCCGAATTTTGAATCAATTCTAGGAACAAATATTCAAAACAACGACGCTGCTAGCAGTGGTAATTTTTCATTGGAGGGCAGTAATTTAAGCCTTAAGAACAATGCTAGAGTATCCCAGGATTCTCTGCAACCATTTGAGGTAGTTCTTTTGACCGATGATTTGAACGATAATTCCAACAGCGTGGAAACAGAGACTAGCAACAAAGTTGTCAAAATGACCGATACGTCTATGAGCAATATTACGATTTTGAATCAACAACAAAATCAGTCAAGACCGGCAAGTGCAGAAACGAGTGAAAGTTCAACGAAGTCATTTTTAAGGGTGCGTTCAATAGCTGAGCTTCAGCGAATAAAGATTCATTTGTGCTCCATGTGTGGATTGAGTTTTGACACACCACACGCTTTGGAACTACACTTGCTGCAGCACAATACAACTTTATCACAAATTCCTAATGAAATCGGCCGAGCAACACCCGTTCAAATGATCTCGCCAATGGTGTCGCAAAATAGAGAACTAACAAATGCTAAGAATGCGTTACTTTCGCAAATGAAACAGAAAATGACTATGTTACCGCCTAATAATCAAAGATCTTCTAATAATCTAGATATGAACGCCAGAATGAGCCCATACCAAACGCAGCCATCGCAGCAAGGTTATTGGTTTGCATCGTGCAATGGCATGAGCAATAACATGTCGCCGAATCTAAATTATAACTCTTATGTGAATCAGCAACAACAACAAATAGGTTCAAATAGAAGACTAGTCAATCATGTTAATTCTGAAGTTAGTGGTAATTATGCCACATACCGAAGTGCTCCACCTCCATATCCTGGTAACTCAAACTCGTTAGCAACTGGTCGAATTAGTGCAATACAATTGCCAGAGCGGAATGCACCAGGCAGCAGTAGCCCGACGAAGAGGCCATCTGGCGCTGCGACGAGAATTCCTCAACAAAGTTTACCCAGTTTCGAGGCACTCACTGAGTATCGTCAACCTGGTATTCGCATGCCGCCATTCAACTGTAATTCAATTGATCAGACTAATAGTCGAAATGATTCATCAAATGACTCGCGAAGACATCTTCACGTATCAACGCCAAATTTTCATTTTTCTGGAAAAACCTACAGTCGAAATAGTAATGATACAAATTATTCAAGTAATTCTAATAATTTATCGAAAAATTCTCATCCACAACCCGAATCGAAGTTTATTTATACTTGTAAAGAACCAAATTGTAATTATCGAACAGAGTATACAAATCTATTTCGAGCGCACGAAAAAACTCACACGATTCTTCATCAACCTAATATAGTATCAACAAATAGTCAAATGAACATTTCCCAACAACAGCGTCATCCAATGAAGCATGTACCAGTGAGTCAGATGCCAGAGAGGACAAGGCATGCATTGCCGAATGCAGTTCCTAACACCAGAAATTCTGTTATTCATAATACTAACAAGCGTTTGCAAACAAACAGAGAATTAGTAGAACATGTGATGTCAACTCATAATGCAACAAATCAGTTGTGCTGTTACATATGTGATTACTGCACCACACCACAATTCTTTGAAACCGAAGATACGCTGCGTGAGCACATGAATATTCTTCATAATTATTTTTGTAAATTATGCAATAAAAGATATCCCTCTAAGCAACTTTATATGCTACACGATGAAGTACATGCGAGAAACCCTTGTTAA
- Protein Sequence
- MELVDKTGKNRSNDDSRQLKSNVIPENSKNVCAPRKKFCNTVFATKMRNRKNVDKLQKLNTEEVFTSCKKAVSIDVTRLSSNIMPKLVTSVDHKNRKRKRYQWKLGILTKKFKRKKPCDSVNINSPIKEKVIENSNDNVSSTNIESSKNLENENEEKTIKVQDKLYTDTSKADSQRRKSRRYNMNGLNDKLDAELQPDFGMHLEDNYSCRRTEPFIGKLNTKKARCQNLNNILKLEMEIIQLREKTKMETVENKKTDSDEKNESKNLENSEVLENTTIIKNKNKESNEITERDQNIQDCDSKKHTTVTGDKYKATEKIELDNQESKILPVTKSIETKDVTVEIVSCRRTMPFVGKTPRKCYNNMSEGLIQAGCSNSDLKTKVDSACEDINKKLHSSSINEIDNQNSSKDNNECLANSNLSSESSGNNSEIKSQTVVIEAVKSSNMNEKLNESMNNVCEKEVNINNDTNSKSDNPSKKVESKSDEVPVNDPKENFWSCRRTNSYEIKDSSHCSRTLPFISTKNKKKALNISVSTTDSSKIENKMPENVPDGLLLNKEKDSTDQLDQCKETNIPVIQEDALKSVSNTCDATANERSTSMGNLQVENEDWKFKRKRTINLSDNEKQIEKENPSKKLKIKSPVKTMLPDKKKSNIVAESPDNAICSWMSFNCTKHTHNHLDINNCLVSNNESKDVCVSLFKLEDSKDPLVVDYLKKTEFNYKSKKNSSFLIKNIDESSILDTNLDDAALQKHETKDLPTFVIPEIVNKINSDNDETANILNAQDNINAQTEMENSYESVKGSKTKTRRKTFSTSSDSLNCGYSKRKKNSVNYLENFSDSDSESSNSFTMSLRTRAQSRGPVLRCRNNLRSCSIDQTAENDLESYKSLNSGLKRRRKIVFESDENETDNENSKIIETLKQNSEINNYKIDDSQSKSIQEEIANFVEQNIKETLAIPINNQNKNQQDKKKQDVQLIKLETVCESFEDYSASEIETLTEKYIDLLMNSNFSSDTWRKPINYYKSRNEKYTHQVDDSFIPNIESHDVHVQFENCDSTEEIESVIVTPSIESFIDQSYMDTSSPNYCISTATSLDTQIIAFVEHTENSEQRNFGAVNISDALSVPANNEKDKEKTAMVNQIEINEENMKQIEENQINQSDLQTASIVVNGQLMFSCSTCNKICVNEDLLKQHIKDEHENSFKSLNDAITKTAGKSNETEISETKRQSAKYKKKHSYYESLRCTICSVLFDSKESLFDHIMTHNEHELQEAYKTAKAKAKKHEKEKDNSVSENSDKEQEHDVHVLEGKKKKKKKEKTKRKSTESIRNSRSSTEIEDLPKDDTRLTSIQRTSMSSEQHDQQQDVDLVDNCTAVQVISDTRPTAKSITICPCHAHETTNQDLQIEMVLFCKTCYVIFRRRECFEVHYRTSIECRHKRTNNEITKVPRLFCSGCPYVLGSLMEMRAHLEMHAKQNCQGTVTFICNICKVAFYGVGGIFYSHWFNHTKSPNFVASRHSFPKLSVVSVLEDSNVAMTTTKSQEGFFYIAEHVCRLCRLPFNSEPELQRHKLVPCQIPQLSSLRLETHENNRLQMIKLICDLCKKYYVNKENFDRHCIERNHLKTPIAKFSRLPININEQTLVCSLCKVANNTLDNMKEHWKRIHSPIMELYTCKTCNIVPSNDVTNYTYDKFEKHCRLFHKSEVITCLVYFVTARYVCNICRFGFETEKSLKDHQIVHQKKSNAPAISNIPTNSISANTPMISALTSILCDPQLNNAVNSRHAAYVPNSCVQPNSDVQMSTSSYIETPTENFSSDLGNTNEMINMSSSTITPARSVEIASLTNSSNANTLLRSMLVPVVEDQSPQLNQIQPSVETILIDSRSNSPVMDKRTSDNDNLARTNESTVDPPIVPQKSYMTKVNPNFESILGTNIQNNDAASSGNFSLEGSNLSLKNNARVSQDSLQPFEVVLLTDDLNDNSNSVETETSNKVVKMTDTSMSNITILNQQQNQSRPASAETSESSTKSFLRVRSIAELQRIKIHLCSMCGLSFDTPHALELHLLQHNTTLSQIPNEIGRATPVQMISPMVSQNRELTNAKNALLSQMKQKMTMLPPNNQRSSNNLDMNARMSPYQTQPSQQGYWFASCNGMSNNMSPNLNYNSYVNQQQQQIGSNRRLVNHVNSEVSGNYATYRSAPPPYPGNSNSLATGRISAIQLPERNAPGSSSPTKRPSGAATRIPQQSLPSFEALTEYRQPGIRMPPFNCNSIDQTNSRNDSSNDSRRHLHVSTPNFHFSGKTYSRNSNDTNYSSNSNNLSKNSHPQPESKFIYTCKEPNCNYRTEYTNLFRAHEKTHTILHQPNIVSTNSQMNISQQQRHPMKHVPVSQMPERTRHALPNAVPNTRNSVIHNTNKRLQTNRELVEHVMSTHNATNQLCCYICDYCTTPQFFETEDTLREHMNILHNYFCKLCNKRYPSKQLYMLHDEVHARNPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -