Sagr017624.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- -
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000001.1:5333915-5336284[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.066 8.4 7.4 3.5 1 23 85 108 85 108 0.97 2 17 0.5 65 4.7 0.9 1 23 125 148 125 148 0.89 3 17 0.98 1.3e+02 3.8 2.3 2 23 219 241 219 241 0.96 4 17 6.2 8e+02 1.2 3.5 2 23 265 287 264 287 0.83 5 17 4.2 5.4e+02 1.8 2.2 2 23 341 363 340 363 0.94 6 17 0.037 4.7 8.2 0.7 1 23 384 407 384 407 0.95 7 17 0.041 5.2 8.1 4.0 1 23 422 445 422 445 0.97 8 17 2.1 2.7e+02 2.7 0.8 1 23 455 478 455 478 0.91 9 17 0.63 80 4.4 4.6 1 23 494 516 494 516 0.97 10 17 0.0018 0.24 12.3 1.2 1 23 528 551 528 551 0.97 11 17 0.024 3.1 8.8 1.7 1 23 573 596 573 596 0.95 12 17 1.1e-05 0.0014 19.3 1.8 1 23 602 625 602 625 0.95 13 17 0.00029 0.037 14.9 1.2 3 23 632 653 630 653 0.93 14 17 0.0082 1 10.3 0.6 1 23 658 681 658 681 0.97 15 17 3.7e-07 4.8e-05 24.0 0.4 3 23 689 709 688 709 0.98 16 17 1.2e-06 0.00015 22.4 0.8 1 23 715 737 715 737 0.98 17 17 9.9e-07 0.00013 22.6 1.0 1 23 743 765 743 765 0.98
Sequence Information
- Coding Sequence
- ATGGAATCTAAGAAGACTTACCCACGCTTCATCTTCCAGCAAAAGTTTATCAAGATACAACCATGGCAACTAAAGGCGCAGTCTAAACTTGAGAAGCCAAAGCGTAAAGTACTCATGTCTGCCTCGTCGACTTCGGTCGAAGTGAAACTTGAACATGGTGAGAAGTCTGCGGTCCCGAACGAGCTAGAAGAGGTGATTATCGATGGGAGCGATTTACTCGATCCGGACAAGCCCAATCAAGATTTTGTAATCTACATGTGCAAACCCTGCAAGATATACTTTTCACGTAAGCACATGTTCGAGTTGCACAATAGAACAGTACACCCGAGTGAGCCCCCTTACATCGGTTATCGTAAGGCCAAGAGCGGTCAATACATCTGCAACTATTGCGATTATCATGCATTCTCCCCAGTACCCATGACGACGCATGTCTCTCGCAGGCATTCACAAGAGCTCATGAGCGATGCAGATATGACCTCGAGAGATGCAATAGAGGCGGAGAAGCCCCAGAAGATCGAGGAGCTTGGGCTACTCGTGGAGGATGATGAAGACTCGTGGCCTATGGAAGTAATCGAGGATTTGGAGGTGGAGGCGACCGAAGAGGAGAAAGTAGATGCAGAGGCATCAACATCGAGCGGGCGCAACAGGCCGCGCAAGTGTCTCTTCTGTCCTTTTGAGACGGAGAAGAGCTCAACCTTCTACTCGCACCTTAAGCGCAAGCACAGCGAGAGTTGGCTCAAGACAGTAAGCGAGAAGATGGCGGCACTCCAAAAACCCAACCTTAACGAAATTAGCTGCACCCAGTGCTCCTTTAAGAGCTTCAAGCACTCGAGCATGCGCTCGCACGTTGCTCGAAAGCACGGCACTGCGGGTGCCGAGTCGGTCAAAAGTGCCGAGGACGAGTCGCGCGACGAAGACAGCAACGACGCCATCGCCGAGTACCTTAATTTAACGCCTCAACGCAATCTACCCTGTGACGAGGATGAGGCCGGCGCGTCCGAGCAACCGCACGAAAAAAAGAAGTGTCGCTTCTGCCCATATGAGTGCTCGCTCCTCGGGACGATGCGGTCGCACGTGGCTCGCCGTCACCCGAGGCAGCTGGCGACGGACCGGGACGAGACGGCGGCGAATTCCCAAGCGTATACGGGCTACGCCTGTCACTTCTGCGACTTTGTAGCATCGACCGTGGCTAGCTTCAAGGCGCACACGGCGCGCCAGCACTCGGTTGAAAAGCAACCCCTGATGGAGGTCCCCGTCAACGAGTACGACTGCGATCAGTGCGAGTTCAAGACCAAAGACAGGCGTAACATGCAGTTGCACGTGCGCAAGTGTCACAAGGTCGTAGCGAACGCCGAGGGCATGTATGCCTGTCACGCGTGCACCTACGAGACGCTGTCGCGCATGGGCCTCCAGAGGCACATCTCCATCAAGCACAATAAGCCGAGGCGGGAGGCAGCCGCGGCTTCACGGAGAACTTGTTACAAGTGCGAGTACTGTGAATTCCGCTGTCTCAACCGGAAAACGATGGAGTGGCACACACGTCAGCACAGTGCCCCGTGCAATGCCGAGGAAAGCACCAATTACTTCTGCAACGACTGTGATTTTTCCACATGGACCAAGGGCCAGCTTGAGCTACATATGAAGCGCAAGCACAGGGACTTGGATAGCGGCGCTGCTAAAGTGAAAGAGGCCAAGGCCGAGGTCCAAGAAATCTTTTATGCCTGCGAGCAGTGTGACTACACGAGCAAGAACAAGCACGTGATGAAGGTTCACGTCATCAGGAAGCACACGAACGACTACAACCACGAGTGCGAGCAGTGCGGTAAGAAGTACAAGGTTAAGGCCGACCTCACGAACCACATCAGATTTCAGCACCGCGAACAGCCTATAATTTGTGACGTTTGCGGAAAAACCTGTAGGAATAGTAATCTCCTTTACCTGCACCAAAAATTCGCCCACTACAAACCGGAATTCGAGTGCCTCATCTGTCACCGACGAATGGTGAGCCAGGCCAACCTCGACGATCACATTCTCAAGCAGCATGAGCAGAGAGAGAATGCGATATGCGAAGAGTGTGGCAAGACCTTCTCCAAGCAAGCCAGACTCAAGATACATATGAGAGTGCATTCGGGAATCAAGCCTTATTCATGCAAGATTTGTCAAAAGTCTTTCGCCAGGAGAAACGGACTAAGGCAGCATCTCTTGATTCATACAGGGCAACGACCATACGTGTGCGACATTTGCAGCAAGTCTTTCACCCAGAAGACGGGTCTTATCAGCCACAGAAAAAGTCATCCTGGAATGCATCCCCCACTCCCTAGAGTAACGATTGATCATGTTTTGTCCGAGCTTCTTGCCGATGAATCCTAG
- Protein Sequence
- MESKKTYPRFIFQQKFIKIQPWQLKAQSKLEKPKRKVLMSASSTSVEVKLEHGEKSAVPNELEEVIIDGSDLLDPDKPNQDFVIYMCKPCKIYFSRKHMFELHNRTVHPSEPPYIGYRKAKSGQYICNYCDYHAFSPVPMTTHVSRRHSQELMSDADMTSRDAIEAEKPQKIEELGLLVEDDEDSWPMEVIEDLEVEATEEEKVDAEASTSSGRNRPRKCLFCPFETEKSSTFYSHLKRKHSESWLKTVSEKMAALQKPNLNEISCTQCSFKSFKHSSMRSHVARKHGTAGAESVKSAEDESRDEDSNDAIAEYLNLTPQRNLPCDEDEAGASEQPHEKKKCRFCPYECSLLGTMRSHVARRHPRQLATDRDETAANSQAYTGYACHFCDFVASTVASFKAHTARQHSVEKQPLMEVPVNEYDCDQCEFKTKDRRNMQLHVRKCHKVVANAEGMYACHACTYETLSRMGLQRHISIKHNKPRREAAAASRRTCYKCEYCEFRCLNRKTMEWHTRQHSAPCNAEESTNYFCNDCDFSTWTKGQLELHMKRKHRDLDSGAAKVKEAKAEVQEIFYACEQCDYTSKNKHVMKVHVIRKHTNDYNHECEQCGKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPEFECLICHRRMVSQANLDDHILKQHEQRENAICEECGKTFSKQARLKIHMRVHSGIKPYSCKICQKSFARRNGLRQHLLIHTGQRPYVCDICSKSFTQKTGLISHRKSHPGMHPPLPRVTIDHVLSELLADES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -