Sagr017360.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- -
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000001.1:2080522-2084055[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.013 1.7 9.6 2.0 1 20 113 132 113 136 0.95 2 13 0.0083 1.1 10.3 4.6 2 23 252 274 252 274 0.91 3 13 1.4e-05 0.0017 19.0 1.3 2 23 332 354 331 354 0.95 4 13 5.8 7.4e+02 1.3 7.4 3 23 442 463 441 463 0.86 5 13 0.0027 0.35 11.8 1.1 1 23 512 535 512 535 0.96 6 13 0.0017 0.21 12.5 0.0 3 23 584 605 583 605 0.90 7 13 0.0057 0.73 10.8 0.2 3 23 638 659 637 659 0.91 8 13 0.0066 0.85 10.6 3.7 2 23 704 726 703 726 0.96 9 13 0.023 2.9 8.9 2.7 3 23 741 762 739 762 0.94 10 13 4.7e-05 0.006 17.4 1.0 2 23 807 829 807 829 0.94 11 13 3 3.8e+02 2.2 2.3 1 23 918 942 918 942 0.97 12 13 6.5e-06 0.00084 20.0 0.1 2 23 957 979 956 979 0.95 13 13 0.0093 1.2 10.1 0.5 1 23 1051 1074 1051 1074 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCGAGCCAGGAGACGTGCCTGCCCGAGTCGACGGAGATCGATAGCGAGGGTTCGAGCTGTGAGGAGCGCGAACCTCGCAAGCGACTGCCCGGAGAGTTGGAGGGCCTGCCAAAAAAGCGTCGGAAACAGTCGACCCCCGTCAAGTTCTCAACTTCGCTTACGCTTGGCGAGTACGATGAGTCGGAAGAGGAGCCACAACCCCCTAACCACCAATACCTCCAGCAGTACGAGTTCAACTCGCAGGACCAGGAAGGTAAGCCGACGACACCGCCGCGCCCCAAGTCCAACCAGGGCCATCCAACCATCAAAGACGAGAACCTGAACAATGAGTTCCGCTGCCAGTACTGTAGTCAATTTTTCGATAACCGCGTGGCGCTCGAGCTGCACCTCGAGTGCGAGCATGGCTTCGTACCGCAATCTCAGCAGTCGCAGCAACAGCAACAGGAGTCACCGCCGAGTCCCGACCAGTCGCACAACGCCGCGGAACAGGCGATCAACCCGATGAACCTTTCGGGCATCAGTATACGCAACTTTGCAACGAACTCCCCCTGGCAACAGATGCAGGGCGAGTCGGCCCTCGCAAAGATAGCCGCAGCCCGGAACAATAATCATTTCCCGCCGATGCCTGCAGGCTTCCCTGGTCCCCTAGCCCCCTTCCTCCCAATGCCCGGCTTCCCCATCCCTGATTCCGCTCAGATCCAGAGGGCGGCCATGGGCCAATTTCCAAAGATATTCAACCCCGAAGCCTACTGCGATCTCTGTAATAAGGAATTCTGCAACAAGTATTTTCTCAAGACACACAAAGCTAATAAGCATGGCATCTATGTCGACCCGCCAGTGAGTCAGAATCAAGGAGCCGAAGCTCAGCCTAGCAGTCCCTTTATAGCTACATCAAGTCCCATTGGAAACCTAGCCGGCAACACCAATATTAAAGTTGTTGATCCGCAACGTCTTGAGAGTAATGGCATACAACAGCCACCAACGTTACCTTGCGATATGTGCTCGAAGCGGTTTAAGAACGAAGATTCCTTAAGGAAGCATCGCCAGAAGATCCACATGAATCACAATAACGAAGTTACCGATTCGCATCAAGTTCAATTGAGTCTCCCATCTTCCTCGGGTGAAGAAGAGAGGCAAAGTCCTGGTGGTATGGAAGCTCTGTTCAAGCAGGAGTACAACATAGAGCAAGAAGATGCTTCTTATCCACCAACACCGAGACCTGTGTCTATGTCTCCTCAGCCATCCCAGCAAATCAAAGACGTGGCCGTCAACGGCGAACGGTTAAGGCGCATCGGAGTTATGAACCCGGAAGCATTTTGCGAGATATGTTGCAAGGAGTACTGCAACAAATATTTTCTTCGCACGCACAAACTCAAAAGACATGGGATTTTTATTCCGGACAGTGACAAATCGCCCATCCTTGCTGGTTCAGCTGCGACTTGGCATCAAATTCAGACCAGTCCTTTGAACCTCATTATGGCTGACGGCCTTGGAAATGGCTCTGAATCAGGGGATCGTACGGAGGAATATGCCTGCAAATCTTGCGGTATACGTTTTCAAACACAAGGTCTATATCATCTACATATGGAGAAAATTCATGAAAATAAAGAAGAATTATCGCTTAAGATGGAACAAGAAATCGATCCAATGGATCCACGAACAGATTCCATTTCTGAAGATCTACAAAAGCTTCAAACTATGATTCTGCAATTAAACGGTTTAGAATCAAATAAGGCAGCATCCTGTGCTCTGTGCGGCAAAGATTATGATACTCCCGCCGCTCTGAGGACTCATATGGTGGCTGAACACGGTGTAATTCAGGAAAATTTGACATCACCACAGCAACAACAACAGCAACCACCAAGAGAAAAGATGTCACCAACGAGTCTCGTAGTTCCTGCTATTTGCACTCTCTGTGATCGGGAATATCCAAGTCACGAGGCTTTGAGGAAGCACGTAGCAGAAGATCATCAACCATCAACGCCTACATCTAGTTCGACGCCGCAATTACCATCTTCGGTAGCGTCCACCCCTAAATCGAATTCCTCACAGCAAGGAGAGCAGCCGCGCAAAGCTACATCATCCATAACACCAACTTCGAGTTACTGTGAGATATGTAACAAAGAACTCTGTAACAAATATTTCATGAAGACGCACATGCAAAAGATGCACGGTATCGAGATTGAAAACGGTGCGCAGATCGGCGGTGTAATATGCAATATCTGCAAGAAAGAACTGTGCAGCAAATATTTTCTACGTGTGCACAAGCAAAATACTCATGGAATCGTCGAAGAGGGAGCAACAGCTGGGAAGCAGGAGAACATGGAGCCACCCACCAACCCCGAGGATCTAGCTCTCAAACCTGAACAGTTGGGTGATCTCAGCCTCCGGTACATTACCCATTTCACGGAGGTATGTCCAATCTGTAACCGGCGCTTCCGCAGTCACAAGTGGTTAAAAGTTCACCTGCAGGGAGAGCACGGTAAAGCGGGAATAGATAAGTGGCGCGAGATCGAACAGTACCATCAAACGATACCTAAGACTCCCGCCCGTGTTCCTAGCGTTCCCAAAATCTCACAGCAACAGCAGCAACAGCAACAGCAGCAAACACACATAGGCACAACACTAAGAATTCCGAACGGATTCGAGCCCAGTCAACAAATACGTGCCGACTTGGCGGCTTTGGGAAATCAGGTACTCTCCAACTTCTTGGGAAACGCAGGAGATGAGCAAAGCAGTCAAACGTATCGGTGTTCGCAGCTCCATTGCAATTTTTCCACCTCTATCTTGCCGCTCTTTTTCTTGCACGAGCGATCACACAATCACCAGCAAGAGAGCGCTGCCCTAGAGAATGAGCGAGTTCAGTGTCCCATCTGCGGTCAGAACTTTAACCAGCCAGAGTTGCTGCGCCAGCACATAGCCTCCCGACACCCCTTCCCCGGTCTCCTCTCCCAATTCCCCATACCGTTGCTCGGTGAGTTCGCATTGGGCACGGCTGACCATCAGCAACAACAGCAGCTAGAGTACGAGGCACGAGAGGAGCTGCGGCGGGCAAGTCCCCAGATCATGAACGAAATAGACACGAACAAGATGCGCAAAGCTCAGGAGGAGAACGCAGCAGTGCAGGTGATGGCCCAGGGCGCTTACAAGTGCGCCCAGTGTGGCTTCGCCACGGCCAACCTTAACCGTATAAAGAAGCACATACGCAAGGACCACAAGAGCCTGGGCGACCCCGCGGAGACCGCCCTTGCCGAGTTGGCCAAGACCTTGAAAGACGTGGCGAACAAGCACAAGGTGCCGGCCAGCTACGCCATGCCGCAAGAGCCTGCCCTGGCCGGGCCCGACAAGACCATCATGCAGCCCTTCATCATCGAGGAGCTGGACAGTCCAACGCGCAACGGCAACGGATGCGCGGCCCTCGAGCAGCAAGAGGCCCACCGGCGCTTCGCCCCCGCTCTCGTGTTCCTCCCGGTGAAGACGCGCGTCAGCGGCGCCCTCACCATGTCCTTCACCCTCAACCCCGCCTGA
- Protein Sequence
- MSSSQETCLPESTEIDSEGSSCEEREPRKRLPGELEGLPKKRRKQSTPVKFSTSLTLGEYDESEEEPQPPNHQYLQQYEFNSQDQEGKPTTPPRPKSNQGHPTIKDENLNNEFRCQYCSQFFDNRVALELHLECEHGFVPQSQQSQQQQQESPPSPDQSHNAAEQAINPMNLSGISIRNFATNSPWQQMQGESALAKIAAARNNNHFPPMPAGFPGPLAPFLPMPGFPIPDSAQIQRAAMGQFPKIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYVDPPVSQNQGAEAQPSSPFIATSSPIGNLAGNTNIKVVDPQRLESNGIQQPPTLPCDMCSKRFKNEDSLRKHRQKIHMNHNNEVTDSHQVQLSLPSSSGEEERQSPGGMEALFKQEYNIEQEDASYPPTPRPVSMSPQPSQQIKDVAVNGERLRRIGVMNPEAFCEICCKEYCNKYFLRTHKLKRHGIFIPDSDKSPILAGSAATWHQIQTSPLNLIMADGLGNGSESGDRTEEYACKSCGIRFQTQGLYHLHMEKIHENKEELSLKMEQEIDPMDPRTDSISEDLQKLQTMILQLNGLESNKAASCALCGKDYDTPAALRTHMVAEHGVIQENLTSPQQQQQQPPREKMSPTSLVVPAICTLCDREYPSHEALRKHVAEDHQPSTPTSSSTPQLPSSVASTPKSNSSQQGEQPRKATSSITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIVEEGATAGKQENMEPPTNPEDLALKPEQLGDLSLRYITHFTEVCPICNRRFRSHKWLKVHLQGEHGKAGIDKWREIEQYHQTIPKTPARVPSVPKISQQQQQQQQQQTHIGTTLRIPNGFEPSQQIRADLAALGNQVLSNFLGNAGDEQSSQTYRCSQLHCNFSTSILPLFFLHERSHNHQQESAALENERVQCPICGQNFNQPELLRQHIASRHPFPGLLSQFPIPLLGEFALGTADHQQQQQLEYEAREELRRASPQIMNEIDTNKMRKAQEENAAVQVMAQGAYKCAQCGFATANLNRIKKHIRKDHKSLGDPAETALAELAKTLKDVANKHKVPASYAMPQEPALAGPDKTIMQPFIIEELDSPTRNGNGCAALEQQEAHRRFAPALVFLPVKTRVSGALTMSFTLNPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -