Basic Information

Insect: Sycophaga agraensis
Gene Symbol: RREB1
Assembly: GCA_018906755.1
Location: JACCIE010000043.1:1162745-1168331[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.19 25 6.0 0.0 1 23 43 65 43 65 0.97

2 16 0.00025 0.032 15.1 0.1 1 23 81 103 81 103 0.97

3 16 4.8e-06 0.00062 20.5 4.5 1 23 109 132 109 133 0.97

4 16 0.95 1.2e+02 3.8 0.0 1 23 233 257 233 257 0.84

5 16 0.099 13 6.9 0.8 2 23 263 285 263 285 0.94

6 16 5.3 6.8e+02 1.5 0.4 1 19 339 357 339 359 0.89

7 16 0.051 6.5 7.8 0.1 1 23 470 492 470 492 0.96

8 16 1.9e-05 0.0025 18.6 0.3 1 23 501 523 501 523 0.98

9 16 0.00094 0.12 13.3 2.8 1 23 529 552 529 552 0.97

10 16 0.00035 0.044 14.6 3.0 1 23 940 963 940 963 0.97

11 16 0.0005 0.064 14.1 0.1 3 23 1225 1245 1223 1245 0.97

12 16 0.69 89 4.2 6.5 1 23 1251 1274 1251 1274 0.97

13 16 0.0063 0.81 10.6 2.3 1 23 1326 1350 1326 1350 0.97

14 16 2.6 3.3e+02 2.4 2.7 1 23 1441 1464 1441 1464 0.89

15 16 0.0085 1.1 10.2 0.4 2 23 1514 1535 1513 1535 0.94

16 16 1 1.3e+02 3.7 8.2 1 23 1541 1563 1541 1563 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.19	25	6.0	0.0	1	23	43	65	43	65	0.97
2	16	0.00025	0.032	15.1	0.1	1	23	81	103	81	103	0.97
3	16	4.8e-06	0.00062	20.5	4.5	1	23	109	132	109	133	0.97
4	16	0.95	1.2e+02	3.8	0.0	1	23	233	257	233	257	0.84
5	16	0.099	13	6.9	0.8	2	23	263	285	263	285	0.94
6	16	5.3	6.8e+02	1.5	0.4	1	19	339	357	339	359	0.89
7	16	0.051	6.5	7.8	0.1	1	23	470	492	470	492	0.96
8	16	1.9e-05	0.0025	18.6	0.3	1	23	501	523	501	523	0.98
9	16	0.00094	0.12	13.3	2.8	1	23	529	552	529	552	0.97
10	16	0.00035	0.044	14.6	3.0	1	23	940	963	940	963	0.97
11	16	0.0005	0.064	14.1	0.1	3	23	1225	1245	1223	1245	0.97
12	16	0.69	89	4.2	6.5	1	23	1251	1274	1251	1274	0.97
13	16	0.0063	0.81	10.6	2.3	1	23	1326	1350	1326	1350	0.97
14	16	2.6	3.3e+02	2.4	2.7	1	23	1441	1464	1441	1464	0.89
15	16	0.0085	1.1	10.2	0.4	2	23	1514	1535	1513	1535	0.94
16	16	1	1.3e+02	3.7	8.2	1	23	1541	1563	1541	1563	0.98

Sequence Information

Coding Sequence: ATGCTTTTCTTTGGCTTGCTTGCAGTGACTGCCGAGACTGGACCGGACCACCGCGACGGCTGCACCGAGAGCCAAACGGATGTTGCATCATCGCCACTGGTCGAGGGTCAGCCGGTGGAAGGTAGGTACGCGTGCCCCGCGTGCCCCCTCGTCCTGGGCAGCGTGCGCGAGCTGACGACGCACCTGCGCGGGCACAACTCGCCCCGGAGCACGACCGACTGCAGCGGCGAGGAGGTCGACTACGCCTGCGGCGTCTGCCACAAGGTCCTCAGCTCGGCGAGCAGCCTCGACCGGCACGTCCTCGTGCACTCGGGCGAGCGGCCCTTCAAGTGCAAGCACTGCGAGATGGCCTTCACGACGAACGGCAACATGAACAGGCACCTGCGCACGGCCCACCACCACCGGGGCGCCTCGCCGGGCGCGCACAGCTGCACCGACAGCGAGGGCAGCAGCGACAGCGAGCGCCCGGGGCCGCGCCCGCGCCCCGGCGGCTCGGGCCCCGGGACCCCGCGGCCCCCGCCCCACGTCCTCCACGAGGAGTACAACAACAACGAGGTGGCCAAGCGGCCCGAGGTCCTCCTGCCCGGGAAGCGCAAGTGCCCCGACTACGCTGAGGAGCCCGAGGGCCAGCAGCGCCGGCACAAGATCCTCCTGTCGCGCGCCGAGCTGCGCGCGGGCTTCCCCGAGGCCGCGGCCTACGCCTGCCACGTCTGCGGCCGCCAGGAGCTCGGCTCCCCCGCCCTCCTCGAGGCCCACCTCGAGCGCGCCCACCCCGAGGTGCCCGCGCGCTGCGAGACCTGCGCCCTGGCCTTCAAGTCCCACCGCGCGCTCAACCTCCACCGGGTCATGATCCACCTGGGCGAGCGGCCCGGCAGCCCGCGCGGCCTGCGCCACGGGGTCGTCGGCTTCAACGACCTCACCTTCGTCGACTTCTCCTCGGACAAGTTCCCGGCGATCGCGCGCGCCGTCTGCGAGCAGTCGCTGCACCGGGCCCCGAGCGGCGAGACGCCGCGCTACCAGTGCGCCAAGTGCCTGCGCGGCTTCCCCTGCCGCTCGGCCCTCGACGCCCACGAGACCGACTGCGGCCTGCGCCCGGCGCCCTCGGCGCGCGACGCCCGCGACACCCGCGACGACTTCTTCGCCGGCCTCGACCTCCAGAACAAGGCGGCCCTCGCCGAGGCCAAGGAGGGCAAGGACCTCGCCGACATCCAGAGCATCATCAGCGTCACCTCGGGGCCCATCCTCCAGTCCTTCTCGCGCTCGGACGCCTCCACCCCGGACAACTGCAAGGTCAAGTCGGGCCTCGGCTCCTCGGGCTCCTCGGGCACGCCCTCCTCCGAGTACCACGAGGAGGAGGCCCAGGACGCCTTCGCCGCCGAGTTCCGCCGCATGAAGCTCAAGGGGGAGTTCCCCTGCCGGCTCTGCACGGCCGTCTTCCCTAACCTGCGCGCCCTCAAGGGCCACAACCGGGCCCACATGGGCGTCGGCCCGGGGATGCCCTACCCCTGCAACATGTGTCCCTACAGCAGCACGGACAAGGCCACCCTCGTGCGCCACCTGCGCTCCCACAACGGCGACCGGCCCTACGAGTGCTCGCTCTGCAACTACGCCTTCACGACCAAGGCCAACTGCGAGAGGCACGTGCGCAACCGCCACGGGAAGCTGTCGCGCGAGGAGATCAAGAGCGTCCTCATCTACCACCCGAGCGAGGACTCGACCAACGACAGCAGCCTCGAGCGCGCCTCCCCGCGCCGCGGCTCCAGCCTCTCGAGGGACGAGGTGCGCAAGACCCTCGTCTACCCGAGCGAGCGCCCCGAGGCCGACCTGCCCGCCCTCGCTACGCCCCACTACGCCGAGATCCGCGTCAAGGACGAGGCCCAGCTGCGCCAGGAGCCCCTCGAGGCCCTCGAGGCCCTCGAGCCCCGCCTCGGCTACGAGGCTCGCGGCCTCCACGAGGATCTCGACTCGCGCTCCTCGGATGCAAGCCGCGGCTCCCTCGGCAGCGAGGCCAAGGCCCCGGTGGACGGCGCGCGCCGCGAGCCCGCCCCGGACCGCGAGGAGCCCGAGGAGCTGACCCCGGGCGCCCGCGAGGAGGCGCCCCTCGACCTCTCGATGGACGTCCTCGACCTGAGCAAGAAGGCCGCGGCCGTGGCCGCCGCCAGCGCCGCTGCCGCCCTCAAGGAGGAGGCGCCCGAGCCCGGAAGCCCGGAGGCACGGGCCGCGGCAGCTGCCGCCGCCGCCGCCGCCGCCAACCACAAGGACTTCTACAACACGACGAACCAGCTACTGCTGACGCAGGCCCTCCTCAAGGCCGGCGGCCACGTCGGCCCCGGGCAGACCTCCTCCCTCGAGACCTTCTACGCGAACGCGCACATGCTCTACCGCAACTTCGGCTCCTTCCCGGGGGTCGGGGCTGCGGGCATCCTCCAGCCGTACCTCTTCAACCCCCACCTCTTCGGCCAGGACTTGGCGATGAAGGACCGACTGCAGAAGGAGCTGGTGCGCGGCCTCCAGACCAGCGGTGGCAGCCTCGTGGAGCCGCCCGCGAGCGGCTACCCGCCGGCCTACGGGTCCGCGGGCGGTGCACGCACCTCGCCCGCCGGCCACGAGACTGGCGCCGCCTACGCCAGCCTCGTATCCGCGTCTAAGCTCCTGGGCAAGGGCGCGGCCCCGGCACGCGACAAGCCCGGCCTCGTCGAGGGCGCTGCAGCCCAGGCCCAGGCCCAGGCGCAGGCGGCTAACTCGGTCAAGATGGTCATCAAGAACGGAGTCCTCATGCCCAAGCAGAAGCAGCGCCGCTACCGCACCGAGCGGCCCTTCACCTGCGAGCACTGCTCCGCGAGGTTCACCCTGCGCAGCAACATGGAGCGCCACATCAAGCAACAGCATCCCCAGTACTGGAGCCAGCGGCCGCGCGGCGGTCACTCGGCACGCGGCCGCCCGCCCGCGAACCCACCCACGCTCCTCCAGAGCCTCGGCCACCAGGACCTCGGGGGCTACCCCAGCCTCCTGCCCAAGCTGCAGCCCCTCGCTGCGGCGGACTACCACGGCAAGCACGCCATCTCCGACCAGGTGAAGTACGCGATCCTCGCCCAGCAGCTCAAGGGCGCCAAGCCCGAGGACAACGATTCAGACGAGGAGCTCGTCATCGACGAGGAGAAGAACGCCGCCCGGGAGCAGGCAACCGAGAGGACACTCAGCCTCTTGCGCGGCAAGCTCGAGGCCAACATCGAGTGTCGGGCTGGAGCCGACGAGACCAAGGAGCCCAAGCCCGAAATCAAGGTCAAAGTCAAGGAGGAGTTGCAGGAAGACCCCGCGGAGCTGGGCGACAAGGAGCGCCTCCTCGAGGACGAGGAGGAGCGGGCCGCGAGACACGAGGCCGATCTCGATATCAAGGACGAGCACAACGAGAACGAGGACCTAGCTAGCGTCTCGGAGATCCTCGACAACGCGTCCCAGAACTACCAGCAGTTCCAGTCACAGTACATGAGCGACGAAGAGGGTCTCGTCGCCTCGACGAGCGACTGCAACCAGTCAGGCAGCGACGAAAAGTCCGACTCGGTTAACTCGACCAACTCGGGACACTCGTGCGCCTCCAAGAAGAAGAAGAAGATGAAGAAGAAAAAGAAGAAGAAGAAGTCTGCTTACTCCATGGCCCCGAACCGCGTCATCTGTCCCTACTGCGAACGGCCCTTCCCTTGGACATCATCCTTGCGCCGACACATTTTGACGCACACCGGCCAGAAGCCATACCAATGCATGCACTGCTCGCTCCTCTTCACGACCAAGTCCAACTGCGATCGCCACCTGCTGCGTAAGCACAAGGCGAGCGCGAGCAAGATGAGGAGGACGCGCAGCACGAGCTCGCCCGAGGCCCAGGAGCCGACGGGGCCGGTGGCTCCCAACCAACAGACGGCCGCCGCGGCTGCCGGCGTCAATGGCCAGTTCTCTATGCGCAACGTCCCCGAGCGCCCATACAAGTGCAACCAGTGCCCCAGCTCGACCTTCTCCACCCTGGGCAACCTCAAGAAGCACAAGTCGACGAAGCACTCGCGGAAGTCACGGGCCGAGTCACCGCTCAGCGAGAACCAGCACAGCCCCGAGGAGGGTTCGCACCAGTCGTCGGGCGTTTCGGAGCACGGGATGGAGAGCCAGCTGCGCCAGCAAGCGTCCTCGACGCCCCTCGACGCGACCTCCTCGGGCAAGGCGTCGATCAGCGGCGCCTGCAACACCACGGGCGGCTCCTCCTCGGCCAACGAAGCGGCGCGCTCGCGCAAGACCTCGCCGATCGCCAGCCCCGGGCCCAACGCCGAGGCGCCCTTCAAGTGCCACCTCTGCGACGGCGGCTTCTCCGAGCGCCAAGACTGCCTCGAGCACATCAAGGATAACCACGAGCGCTCCTACGAGATGCTCGTGGCCAAGGGCGCCCTCGACATGGACATCGACGGGCAGGACGAGCCCATGCCCCCGGCCCCACCGCCGCCCAGCGACGGGGAGGAGCGTCGCGGCCGCTTCCCGGACTACAGCAACCGAAAGGTGGTCTGCGCCTTCTGCATGCGAAGGTTCTGGTCGGCGGAGGACCTGCGCCGACACATGCGCACGCACACGGGCGAGCGGCCCTTCTCCTGCGACATCTGCTGCCGGCGCTTCACCCTCAAACACAGCATGCTGCGCCACCGCAAGAAGCACGAGTCCGTCGACTCGAGCATGTACGTGGGGACGAGCGGTGACGAGGAGACGACGGCCAGCCAGCCTCCGACGATTGCCCCGCGCCAGGCGACGGGCGGCAGCGTCCTGGCCGTGGCCGGCGGCCCCGGTGCCCTGACGCCCCAGGTGGCCAGCATCGCCACGGGCGAGGCGACGCCCTCGAGCCTCCGCCGCGGCGTGCCCTTCAACCCCTACGAGAAGCTGGCCACCCTTACGGGCAAGCTCGTGGCCCCGAGCGTCGACGCGAACGACAATACGGACAACGACCTCATCTCCAACCTCCTGGGCATCCGCGACAAGAGCATCATCGACCGCGTCCTCCAGGCTTCGGCCGACGACGCGGCCAAGCTCCTCGGCGTCAAGGGCAACCACGAGTGA
Protein Sequence: MLFFGLLAVTAETGPDHRDGCTESQTDVASSPLVEGQPVEGRYACPACPLVLGSVRELTTHLRGHNSPRSTTDCSGEEVDYACGVCHKVLSSASSLDRHVLVHSGERPFKCKHCEMAFTTNGNMNRHLRTAHHHRGASPGAHSCTDSEGSSDSERPGPRPRPGGSGPGTPRPPPHVLHEEYNNNEVAKRPEVLLPGKRKCPDYAEEPEGQQRRHKILLSRAELRAGFPEAAAYACHVCGRQELGSPALLEAHLERAHPEVPARCETCALAFKSHRALNLHRVMIHLGERPGSPRGLRHGVVGFNDLTFVDFSSDKFPAIARAVCEQSLHRAPSGETPRYQCAKCLRGFPCRSALDAHETDCGLRPAPSARDARDTRDDFFAGLDLQNKAALAEAKEGKDLADIQSIISVTSGPILQSFSRSDASTPDNCKVKSGLGSSGSSGTPSSEYHEEEAQDAFAAEFRRMKLKGEFPCRLCTAVFPNLRALKGHNRAHMGVGPGMPYPCNMCPYSSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLSREEIKSVLIYHPSEDSTNDSSLERASPRRGSSLSRDEVRKTLVYPSERPEADLPALATPHYAEIRVKDEAQLRQEPLEALEALEPRLGYEARGLHEDLDSRSSDASRGSLGSEAKAPVDGARREPAPDREEPEELTPGAREEAPLDLSMDVLDLSKKAAAVAAASAAAALKEEAPEPGSPEARAAAAAAAAAAANHKDFYNTTNQLLLTQALLKAGGHVGPGQTSSLETFYANAHMLYRNFGSFPGVGAAGILQPYLFNPHLFGQDLAMKDRLQKELVRGLQTSGGSLVEPPASGYPPAYGSAGGARTSPAGHETGAAYASLVSASKLLGKGAAPARDKPGLVEGAAAQAQAQAQAANSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSQRPRGGHSARGRPPANPPTLLQSLGHQDLGGYPSLLPKLQPLAAADYHGKHAISDQVKYAILAQQLKGAKPEDNDSDEELVIDEEKNAAREQATERTLSLLRGKLEANIECRAGADETKEPKPEIKVKVKEELQEDPAELGDKERLLEDEEERAARHEADLDIKDEHNENEDLASVSEILDNASQNYQQFQSQYMSDEEGLVASTSDCNQSGSDEKSDSVNSTNSGHSCASKKKKKMKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKASASKMRRTRSTSSPEAQEPTGPVAPNQQTAAAAAGVNGQFSMRNVPERPYKCNQCPSSTFSTLGNLKKHKSTKHSRKSRAESPLSENQHSPEEGSHQSSGVSEHGMESQLRQQASSTPLDATSSGKASISGACNTTGGSSSANEAARSRKTSPIASPGPNAEAPFKCHLCDGGFSERQDCLEHIKDNHERSYEMLVAKGALDMDIDGQDEPMPPAPPPPSDGEERRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSSMYVGTSGDEETTASQPPTIAPRQATGGSVLAVAGGPGALTPQVASIATGEATPSSLRRGVPFNPYEKLATLTGKLVAPSVDANDNTDNDLISNLLGIRDKSIIDRVLQASADDAAKLLGVKGNHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -