Sagr014647.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- -
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000082.1:335645-341357[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.025 3.2 8.8 1.8 2 23 293 314 292 314 0.97 2 16 0.0024 0.31 12.0 0.2 1 23 355 377 355 377 0.97 3 16 0.00033 0.042 14.7 0.2 1 23 383 405 383 405 0.97 4 16 6.1e-05 0.0078 17.0 3.1 3 23 450 471 449 471 0.95 5 16 0.0001 0.013 16.3 2.1 2 23 479 501 478 501 0.96 6 16 7.3e-05 0.0094 16.7 1.2 2 19 532 549 531 554 0.89 7 16 0.00022 0.028 15.3 1.5 1 23 579 601 579 601 0.93 8 16 0.015 1.9 9.5 0.1 2 20 660 678 659 678 0.96 9 16 0.00038 0.049 14.5 0.3 2 23 697 718 696 718 0.96 10 16 0.0057 0.73 10.8 4.0 1 23 744 766 744 766 0.97 11 16 0.0086 1.1 10.2 4.8 3 21 787 805 786 809 0.89 12 16 1.2 1.5e+02 3.5 0.9 3 23 864 885 862 885 0.92 13 16 0.026 3.4 8.7 3.5 3 23 914 935 912 935 0.90 14 16 0.00037 0.047 14.5 0.2 1 23 942 966 942 966 0.94 15 16 0.0059 0.76 10.7 2.9 1 23 971 994 971 994 0.98 16 16 0.0047 0.6 11.1 0.4 3 23 1026 1047 1024 1047 0.95
Sequence Information
- Coding Sequence
- ATGGATGACGTTGTCGAGATCAACGGTTTTGAAAATGCCTGTAGGCTATGTCTCACAACTGAACAAACGAGGTCATCAATATTTGGAGTACCGAATGCACTTTTAGCTGTATCTTTCGCCGAAAAAATACACTTCTGCCTTTCTATACAGGTATTGTCTAGTGATAAATTGTCAACATTTGTATGTACAACTTGTATACAAAATATAAATCAATGGTATTCTTACAAGAATAAATGTTTAAAATCACAAGAAAAACTTCAACAATGGTTAACTGCAAAACAAAATACAGTTTTTCAACCATTGAAAACCGTAAAAGAAGAACCAATAGATGTAGATTTTGCAGAACAAAATTTAAATAATGGAGCTAAGGATCAAAATGTAACTAACAAACACAATGAAAAAAATTATATTGATAATATTTTTTCGTCAACATTAAACACAAATAGTACTAAAGTTAATAATCAAAATGTTAGTACTCATACTAATGTAGTTAGAAATGTTATGGCTCAAGTATTTCTAGAACAAGCTCCTAAAATTAAAGAATTAGAGAAGGATTTTTTGGAGGTAAAACAAATTAAACATGAACCTTCAGATACTGAGGATGAAGATGATTGCAATCTAGATGTTGAATCTGTCAATAGTGGAGAATTGTTAATTAATCCTATGGCAGTAGTAAATACTACTAATAGTGATAGAATCATGGAGGCAGATTCTACTCAAAAGTATAAACCAAACATGTTTAAGCATAGAGAACTTTGTTCTACACTACCAGAGAATATTCGAACCTCTTACAAGTGTATTCACTGTAACATGACGTACCTTGTCTTCAAGAAGTTCTACACACATGTGTTACATGACCATAAAAAACGTGAGATCACGTGTTGTACATGTCAAGCAGTCTTTGAAAATGCCGACGATTATCTTACTCATCATGAGACGCATCGTGTTTTTAATGATAAAGATTACGTAAACGAACAAAAAAATGGGGATATTACAGAAAGCAATTATCCCATAGATCTACAAAGCCAATCGGATCTTGTTACAGACATTTCCGATAAAACTTTCAATTGCGCTTTATGCGGTGAAAATTTCATGACAAAAATTGAACTCTCCGAACACCGTAACCTTCATCTTAAAGTAAAGATCTATGCATGTGTGCTATGTCCTAATATGTTTAGTAGCTCTAAAACTTTAGAGTTACATATGAAAGAACATGGAATTGAGGATGCTGGAGAGCAAAACGCAAACAATTCTTGTGTTGAATATGAGGGGGGTAATCGATCACAAGACAGTTTGAACCATTCATCTCTTTCTGCCACTTCGGATTCTGGTGGAAGATTTAATCATTGCTATGAATGCAATAAGAACTTTTCTAATCTTGCTAATTTGAAAAGGCACGAGCGCAATATGCACATAAAACAAAGACGCCGATGGAGTTGTGAACATTGCAAGCGACGTTTTAAATCTCAGGAATTGTACAAGGATCACGTGAGGATAGAACATAGTTCCCAACAAGAACAATCTGTACAAATTTACAAAACAGTAATGCCTGGTCAATCTCCAGTAACATCTGTAACGGTCAAACCAATAATGCAATGTCCTAAATGTCCTAAGACTTTTACATATCAGGGCAATCTGATTCTACATTGTCAAAATGTTCACAAGGAAAATCATTTCGAACGAGCTAAGGCGAGTACATCGCGTCAATCAGAATCAATTCCAGCCAATGAAGGTCACTCTTGTGATCTTTGCGGCAAAACATTCCGGGAAGAGCAGTCTCTTAAAACCCATCGAGGTTGGCATCTGCGGTCAAACTACAAACTCAAAGTGGATAAGATTAACATAAGTCTAGATGAGACATCGCAAAGGAACTCCGGTTATCCAATACCAATAACGAATTCACCGAAACCAGCCAAAGCACGAAAATCCTTTCCTAATAATCCTTTTCAAAAGCAACTACAAGCACCCGTTAGCATGCAGTGTCAGGTATGCGATGATAGTTTTACTAGCGTAGCCGAATTGCGTAAACATCTCTGGGATGTGCATTGTGCACGAAACAAACCAGAAAAAAGTTTTACAAGTGAGTTGCAGTGTGAGCTCTGTACAAATAAGTTTACTGATGAAGAGTCTCTTGAAAATCACATAAAATGGCACTCAGAAAATCCAATCCTTAGCAATAATGTTAATGACATCAATAGTACTTCGAGCATCAGAGAAACTAAGAAAACTTTTCACTGCGAGATATGCGGCAAGTATTACAGCAATCGTAAGGTCTATTTGCGACATAAAAAACTGCATAAAGTTCTACCGGCGGCAAGTGTTATGAACTTTCAATCATTACAAACCAAAAGACCTTTCTGCAATTCCTGTCACAAAAGTTTCTCCACAGATGCATCGCTTAAAAGACATAAGGCTTCACCTTGTCACGTAATTGTGTCTCGTCCTCAAGCTTCTGTAAAGAAAATAACGACTACGGCGATGGTACACCATCCGCCGGATGAATCCCTGCAAGCGATTAAAAAAGAACTCGATGTGGAGTACTCACCAACTAATCAACCGTCCCATACCATGAAAAAAAAACCTGTTCATTGTCTTATCTGTAAGTCTAGGTTCCCTAATATGAGTGTGCTTTACCAACACAAACAACTTGTACACAAAATGCCCCTTGATAAAGAAAAATCCACCGTCCAGTCGGTAAATGAATGTATCCCTCTAATTAGTGCCGAGGGTTTGGTTTGTTGCAATCTGTGTGGTAGACAGTTTCCTGGTATTTCAAACCTCAAACAGCACTTCTCGCATAAACACAAGGTTAAGCCTGCTACATTCCCATGCTATGCATCAGGGTGCAAACTCGTATTTAGCAGTGCCAGCTCACTCAAAAGTCATGAGTCAACACACTCAAGCATAATGTACAGTTGTCATCTATGTGACAGACACGTCTTTTCCAGGGCTGCTATAACCAAACATATGCTCACCATGCACAAAGCCATATACCAGTCTGGTGCAAATAAAAATAATTTATGGTCTGAAACTGACCTTACTACCTACAATATTAAAAATTGTCAAAGTACAGCTTGTCCAAAGTGTAAGATCAAGTATCCGAACCTGAGAGCACTTAAGATACACTATCTTAAATTTCATGAAAATTCATAA
- Protein Sequence
- MDDVVEINGFENACRLCLTTEQTRSSIFGVPNALLAVSFAEKIHFCLSIQVLSSDKLSTFVCTTCIQNINQWYSYKNKCLKSQEKLQQWLTAKQNTVFQPLKTVKEEPIDVDFAEQNLNNGAKDQNVTNKHNEKNYIDNIFSSTLNTNSTKVNNQNVSTHTNVVRNVMAQVFLEQAPKIKELEKDFLEVKQIKHEPSDTEDEDDCNLDVESVNSGELLINPMAVVNTTNSDRIMEADSTQKYKPNMFKHRELCSTLPENIRTSYKCIHCNMTYLVFKKFYTHVLHDHKKREITCCTCQAVFENADDYLTHHETHRVFNDKDYVNEQKNGDITESNYPIDLQSQSDLVTDISDKTFNCALCGENFMTKIELSEHRNLHLKVKIYACVLCPNMFSSSKTLELHMKEHGIEDAGEQNANNSCVEYEGGNRSQDSLNHSSLSATSDSGGRFNHCYECNKNFSNLANLKRHERNMHIKQRRRWSCEHCKRRFKSQELYKDHVRIEHSSQQEQSVQIYKTVMPGQSPVTSVTVKPIMQCPKCPKTFTYQGNLILHCQNVHKENHFERAKASTSRQSESIPANEGHSCDLCGKTFREEQSLKTHRGWHLRSNYKLKVDKINISLDETSQRNSGYPIPITNSPKPAKARKSFPNNPFQKQLQAPVSMQCQVCDDSFTSVAELRKHLWDVHCARNKPEKSFTSELQCELCTNKFTDEESLENHIKWHSENPILSNNVNDINSTSSIRETKKTFHCEICGKYYSNRKVYLRHKKLHKVLPAASVMNFQSLQTKRPFCNSCHKSFSTDASLKRHKASPCHVIVSRPQASVKKITTTAMVHHPPDESLQAIKKELDVEYSPTNQPSHTMKKKPVHCLICKSRFPNMSVLYQHKQLVHKMPLDKEKSTVQSVNECIPLISAEGLVCCNLCGRQFPGISNLKQHFSHKHKVKPATFPCYASGCKLVFSSASSLKSHESTHSSIMYSCHLCDRHVFSRAAITKHMLTMHKAIYQSGANKNNLWSETDLTTYNIKNCQSTACPKCKIKYPNLRALKIHYLKFHENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -