Basic Information

Insect: Sycophaga agraensis
Gene Symbol: -
Assembly: GCA_018906755.1
Location: JACCIE010000019.1:929357-931443[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3 3.8e+02 2.2 0.3 1 20 293 312 293 316 0.75

2 10 0.062 8 7.5 0.8 1 23 323 345 323 345 0.97

3 10 0.0014 0.18 12.7 2.9 1 20 351 370 351 373 0.95

4 10 0.00021 0.027 15.3 0.6 2 23 380 402 379 402 0.96

5 10 7.5e-05 0.0096 16.7 4.9 1 23 408 430 408 430 0.98

6 10 5.6e-07 7.2e-05 23.4 1.0 1 23 441 463 441 463 0.98

7 10 2.5e-07 3.1e-05 24.5 0.6 1 23 469 491 469 491 0.99

8 10 1.3e-06 0.00016 22.3 0.9 1 23 497 519 497 519 0.97

9 10 1.3e-05 0.0016 19.2 0.4 1 23 525 547 525 547 0.93

10 10 0.00073 0.093 13.6 0.7 1 23 553 575 553 575 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3	3.8e+02	2.2	0.3	1	20	293	312	293	316	0.75
2	10	0.062	8	7.5	0.8	1	23	323	345	323	345	0.97
3	10	0.0014	0.18	12.7	2.9	1	20	351	370	351	373	0.95
4	10	0.00021	0.027	15.3	0.6	2	23	380	402	379	402	0.96
5	10	7.5e-05	0.0096	16.7	4.9	1	23	408	430	408	430	0.98
6	10	5.6e-07	7.2e-05	23.4	1.0	1	23	441	463	441	463	0.98
7	10	2.5e-07	3.1e-05	24.5	0.6	1	23	469	491	469	491	0.99
8	10	1.3e-06	0.00016	22.3	0.9	1	23	497	519	497	519	0.97
9	10	1.3e-05	0.0016	19.2	0.4	1	23	525	547	525	547	0.93
10	10	0.00073	0.093	13.6	0.7	1	23	553	575	553	575	0.98

Sequence Information

Coding Sequence: ATGATCTGGGAAATAACTTGGGCCGATATGTGCCGGGCCTGCATGGAAGTGGAGGGTGATTTAATTTCTTTATATGATGATGATAATGAAATAAATGAGAATGAATTATCCCGCAAACTATCTGAAGTAGCAACAATAGAGATAAAAAAGTCTGATGGTCTTCCAACAAAGCTTTGTACCAAATGTGTATTTAGAACTAATGCATTTTTTGAATTTAAAAGTCTGGTTCAAAAATCAGATAAAAGACTGAGAAATATGTTTAATGAACAAGCGACTTCTGAATTACAGAATAATGATGTAGAAGAACAAGTAGATAGTTTATGCATTTCTAAAAACCAGTTGACAAAAGACTGTAACTCGAATCAAAAGAAGAACTTCCATTCTAGTGAAAGCATACTATTGCAAGAATTAGAAGATAAAATTAATGATTCAGATTTGATGGAAAATTTTGAGAAAAATTGTGATTCTATTATTTTAAATATACAAGAAGACTTAAAGAATGTGTCAGAAGCTAAAGAAAGTGATAAATACTTAGATATTTTGTTACAATCTAAAGAACTTGATACAATTGAAACTTCATTAGGGCTAATTGAAAATCAACAAAATTATGAAGCCACACAAACAGATTCGTTACATAATCAAAATCAAGAAACAATGATTCCAGAGCAACTTGACAATAGTGATTTTCAAAATTCTTTAAAGGCTGTAGATCAGTTAATGAAAAATGATAATGTTTCTGAAGATTCACATTTATATACAGATCATGATGATAGTGACTCTGATGCTTATACAAATCTAACATCTAATGTTATTGGTAGTCTCAATGATACAATCACTAAAATTAAAGAAATAAGAAATGAAACTGGAATTGTGCAATATCAATGTACACTCTGTTCTGAAAATTATTTTGGGCTTTTTGAAACTTTAAATCATATAGTTGATTTACATGTTCCAAGTACTGGACCATTCTATTGTGTAGTGTGTGAAATGGATTGTAGTGGTATGAAAGAATTAAAGTCACATGTAAAAGTTCACAAAGGTCCAACTCCGTATGTATGTTTTCTTTGTAATAAAGCTTATGTAATGAAAAGATATCTGAAACGTCACATGGCATGTCATACAGATTTCCCTCGAAATCGTTGCTCAAAGTGTGGATTAAGATTTAAAATTAAAACTGAATTAGAATCTCATATTATTTCTATGCACGCAGAAAATGGATCTTACAAATGTAGTCAATGTTCAAAGTTGTTTAATCACAAAGGAAATTATAAACGTCACTTAATTTCTCACCTTGATCCACAAGGTCTCCATTTACCAAAATATCCTTGCAAAATATGCAAGAGAAGGTTTGTAAATAACCGCACATTAGTAACACACATGAGAGTACATACTGGAGAAAAACCTTACAAGTGTGAATCATGCGGGAGAGCATTTTCTCAGCAAGGGAATCTTTTGAATCATCGTAAAATTCATATAAATGCAAGAAACTTTACATGTGAAGTATGTGGGAAGAGCTTTAATCAAAAAGCAACTTTGAGAGATCATAGTAAGCTTCATTCAGGAGAAAAACCATACGTATGCACAGTATGTGGATTATCATTTACTTTTACTGCTTCTCTTCGTCGACATATGTGGACCCACAATGGAGGGAAGCAATTTGAATGTGATATTTGTAATGCCAAATTTCTTGGAAGATATGATGTTAAGAGACACATGAAAACACATAACAAAAAATCTAGGAAGCCAAGATGTAAGAGGATCACCAAAACTGAAAAATCAAATATTGTGAACACCCCTGAACAAGTAATTCATGTTACAGAGAATTCAAATAATCCAGATGCAATTTTTCATGAAATATTTTTGTGTGATGATTCTATACAAATCATTTCTGATAAAGATTCTGATACAGAGAATGTTGACTCTTTGATAGGCCTAATTGCATATTCATAA
Protein Sequence: MIWEITWADMCRACMEVEGDLISLYDDDNEINENELSRKLSEVATIEIKKSDGLPTKLCTKCVFRTNAFFEFKSLVQKSDKRLRNMFNEQATSELQNNDVEEQVDSLCISKNQLTKDCNSNQKKNFHSSESILLQELEDKINDSDLMENFEKNCDSIILNIQEDLKNVSEAKESDKYLDILLQSKELDTIETSLGLIENQQNYEATQTDSLHNQNQETMIPEQLDNSDFQNSLKAVDQLMKNDNVSEDSHLYTDHDDSDSDAYTNLTSNVIGSLNDTITKIKEIRNETGIVQYQCTLCSENYFGLFETLNHIVDLHVPSTGPFYCVVCEMDCSGMKELKSHVKVHKGPTPYVCFLCNKAYVMKRYLKRHMACHTDFPRNRCSKCGLRFKIKTELESHIISMHAENGSYKCSQCSKLFNHKGNYKRHLISHLDPQGLHLPKYPCKICKRRFVNNRTLVTHMRVHTGEKPYKCESCGRAFSQQGNLLNHRKIHINARNFTCEVCGKSFNQKATLRDHSKLHSGEKPYVCTVCGLSFTFTASLRRHMWTHNGGKQFECDICNAKFLGRYDVKRHMKTHNKKSRKPRCKRITKTEKSNIVNTPEQVIHVTENSNNPDAIFHEIFLCDDSIQIISDKDSDTENVDSLIGLIAYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -