Sagr010609.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- -
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000069.1:136436-139574[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0098 1.3 10.1 0.4 3 21 8 27 6 28 0.85 2 14 0.77 99 4.1 0.0 2 20 34 52 33 53 0.93 3 14 0.18 23 6.1 0.3 1 12 222 233 222 242 0.89 4 14 0.13 16 6.6 0.6 1 21 365 385 365 386 0.94 5 14 5.4e-06 0.00069 20.3 0.3 2 23 391 412 390 412 0.98 6 14 0.16 20 6.3 3.2 1 23 423 445 423 445 0.95 7 14 0.02 2.6 9.0 0.2 1 23 464 485 464 485 0.94 8 14 0.002 0.25 12.3 0.1 2 23 491 512 490 512 0.95 9 14 3.8e-05 0.0049 17.6 4.8 1 23 569 591 569 591 0.99 10 14 4.6e-06 0.00059 20.5 5.0 1 23 597 619 597 619 0.98 11 14 0.0001 0.013 16.3 4.6 1 23 625 647 625 647 0.98 12 14 1.2e-06 0.00015 22.4 0.8 1 23 653 675 653 675 0.98 13 14 7.3e-05 0.0093 16.7 0.2 1 23 679 701 679 701 0.99 14 14 0.00015 0.019 15.7 0.1 1 23 709 731 709 731 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCAATAAGTTTGATGTGTCCCATGTGTTGTGGAGAGTCTTTCAATAACTCTGAGTCGCTCAAGTATCATTTATTGAGCATAACAGATAATCTGTACTGTCCTGGATGTTCTTTAAGGACTTACTCAATGGCTGCATTAATACAACACTTAGACTGTTGTGGAAAAGAAATAGAACATGAAGATCAGTATTATAACAGAGAAACAACTAACAATGTTTTAACAAATAGAGATATTGATAAAGAAGGGCCAGATATTTTAATGGATGAAAGTGATAATGCAATAAATGATGGTTTCCTAGCAGCGACAGTTAATGATGAAGGAATTATGATTGTTGGAGAAGGTAGAACAATTCAAGTAGATGAAAATGGTGATATTCAAGTTTTGGACAAAGTGAATACAATTAGTAAAAAGAAATGTGTATCATTTTCAAAGGTTGATAATGATTCTCCTAAGCAGCTAAAAAGTCAAGAAAAGTTAATTGTTACAAAAGTTGATGAAATGTCAAATATTGCAACTTCTTCTGACTTACTAATTCAAAGTGAAAATACGATTAATATCATACGTGACGATGATATCAATCTTAATCAAACTGAAACTTTAGATGTAAAAAAAGAATGTGATCAAGCATTAGATAAAAAGGTGGATACAAGTATTATATATAGTTGTAGTACTTGTGGCTTGAGTTTTAATTCTGTATTAGAGCATATAAAACAATATCATGATGGACAAGAAGTAGTACTAGAAATGGCTGAACAGCAAATAAATGATATTGAAGCAACTACAACAGATACAGTAATTCAGTCACCATTTGTAATAACAACTTCTTTAGAGTCTATAAATAATGTAGTTCAAACAACTGCAGTTCCAATAAAACAAAGACAAACAATGAATACATTACGAACTGAAGAATGTATAGATAGTGATGGTAGATTATACACAAGGAAAGTTGTACAAATTGAAAGATTTTGGGATCGAACTCCAGTAACTCTTTCTTCAACAAAAGCTCCAATGATTGAAAAATTCTTTTCCAATGTTGAAGGAGTTAAGGTTAGAGATAAAAGTGTGACTGTTGCTCCAACTCGAATGTACAGGTGCAATCAATGTTTAGAACAATTTGCTGAGTTAGGTGATTTTCGTATTCATGTCTGTCGTCAAGGTAATAATAAGTGCTACCAGTGTGATCAAACTTTTGCATCAGCAAAAGCTTTACAGGCACATATGAAAGTGCATGATAACAGTGACTTTCCTTCCCAAAACATATTTCTGTGCACTATATGTAGTACTGAATTTTTAACTCATAAGAGTCTTCGTCTTCATTCAAGAATGCATGCACCTGTTAGAGCTCGACATGTTCAAGCACCTGAAGGAACAGAAGAAGAGACTTTTGTTTGCACTGATTGTGGTACAACTCTATCAGAATCATATAGAACGGCGCACATGGCACTGCATGCTGGAGACCCAATCACATGTACAGTTTGCAATAGAAAATTCGATTCTACTGAAAGTTTAGCAATGCACGCAGCTGTGCATACTGAAATGAATATGAACTCACCAAATGCAATTACCAATGATATAATAATTGCTGTTTCACAGGATTCTGCAGAAACAGTATTCATTAGTACTGGAACTACAGCTCCTTCCAATACCCCACCAATTACTGTTACTACAAACTGTGCTGAAGTTCAGAGTCAAAAGCCATATCAATGCCAACACTGTGGTCGTAGGTTTACAAGACCTCATGAGAAAGTTAAACATGAAAGAATACATACTGGAGAAAAACCACACTCATGTGAGGTTTGTGGCAAAAAGTTTCGTGTTTCTTACTGTTTAACTCTTCATATGCGGACACATACTGGTGTCAGACCTTATGAGTGCCAACACTGTGGCAAACGTTTCAAAGCATCCTCTGTCTACAATCACCATTTATTGACCCATGGAGAAGAGCGTGCTTACACGTGCCCTTACTGTCCTAAAACCTTTAAAACTCGCGTTCAACTAGCTGGGCACAAAAACAGTCATACAAAGCCATTCCGATGCACTGAATGTTCACGACCATTCGCTTCACTTTATGCTGCTAGAGCACATATACAGACTCATAAAAGGAATAATAACTTGAAGTTTAGTTGCAACATTTGTGGAGCTTCGTATGGTAGAGCTTTTGCATTGAAGGATCATGTAAAACAGCATGACAGAAATAAAACTATAATACCCCCAGAACCTACCAAAGAGGAAGAAGTTGAAGAAGTTGAGAACTTTTTAATTCGAGATGAAGAAGATGAAGAGCTTATAGTGCCTTCACCGCCCCATTGCATTAGTATGCAAACTCAACTTGAAGTGGAAGAATAA
- Protein Sequence
- MGSISLMCPMCCGESFNNSESLKYHLLSITDNLYCPGCSLRTYSMAALIQHLDCCGKEIEHEDQYYNRETTNNVLTNRDIDKEGPDILMDESDNAINDGFLAATVNDEGIMIVGEGRTIQVDENGDIQVLDKVNTISKKKCVSFSKVDNDSPKQLKSQEKLIVTKVDEMSNIATSSDLLIQSENTINIIRDDDINLNQTETLDVKKECDQALDKKVDTSIIYSCSTCGLSFNSVLEHIKQYHDGQEVVLEMAEQQINDIEATTTDTVIQSPFVITTSLESINNVVQTTAVPIKQRQTMNTLRTEECIDSDGRLYTRKVVQIERFWDRTPVTLSSTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAELGDFRIHVCRQGNNKCYQCDQTFASAKALQAHMKVHDNSDFPSQNIFLCTICSTEFLTHKSLRLHSRMHAPVRARHVQAPEGTEEETFVCTDCGTTLSESYRTAHMALHAGDPITCTVCNRKFDSTESLAMHAAVHTEMNMNSPNAITNDIIIAVSQDSAETVFISTGTTAPSNTPPITVTTNCAEVQSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKRNNNLKFSCNICGASYGRAFALKDHVKQHDRNKTIIPPEPTKEEEVEEVENFLIRDEEDEELIVPSPPHCISMQTQLEVEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -