Sagr015258.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- -
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000038.1:1227587-1230385[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.8 3.6e+02 2.3 1.7 3 20 120 136 118 138 0.77 2 14 0.0017 0.22 12.5 0.1 3 20 146 163 145 164 0.94 3 14 0.00053 0.068 14.0 0.4 1 23 172 195 172 195 0.90 4 14 7.9e-06 0.001 19.8 0.3 1 23 201 223 201 223 0.99 5 14 6.2e-06 0.0008 20.1 2.0 1 23 356 378 356 378 0.96 6 14 0.025 3.2 8.8 0.1 2 20 388 406 387 408 0.91 7 14 0.00015 0.019 15.8 2.0 1 20 430 449 430 452 0.93 8 14 0.07 8.9 7.4 0.5 3 23 459 480 457 480 0.94 9 14 2.3e-06 0.0003 21.5 0.3 1 23 486 508 486 508 0.98 10 14 0.0017 0.21 12.5 6.9 1 23 515 537 515 537 0.98 11 14 0.00029 0.037 14.9 0.4 3 23 545 565 543 565 0.97 12 14 0.00031 0.04 14.8 0.3 1 23 571 594 571 594 0.96 13 14 0.015 1.9 9.5 0.3 1 23 608 630 608 630 0.97 14 14 0.001 0.13 13.1 0.1 2 23 870 891 869 891 0.96
Sequence Information
- Coding Sequence
- ATGGAGAAAAATGAGAATGAGAAATACGTTAATTTTTCATTACATAATGTACATGAAGGTATACAGGATAATATATCTCACGAAGAAATTTGTGATCTAGCTGATGAATGTGTTGTTCAAAATAATTTAACTGAAATTACAATTGAAAATATAAATACAAAAATTACAGAAAATCAAGTTGCTGTAGAAATGTTGGCTGAAAATTCTGAAGAAGATGAAGAACATCAATCAATAATATATCCTATTTACATTAAACAGAAATCTTTACAGAAATTTACAAGTGGTGATGAAACTATGGCTATTGAAGCTTTAAGTCAATTGGGTGGAACATGTCCATTAGTTGAAGAAAAAATTTGTTGCTCAAATTGTAACATGACATTCATACACACAGAATTTATAAAACACCAATCTGTTTGTAAATTTAATAAACCTATTTGTAGTACTTGTGGAGAAAAATTCGAAAGAAAAATAGATTTAAATAACCATGTAGTTTGTCACCAAGTTGATCGTCCACATGCTTGCAGAACTTGTGGTAATTTATTTCGTTCCAAGGCTAATTTACAAGCACATATGGTGGAAGTTCATCAAATTGAGCGACCTTATAAATGCAATGTCTGTGGAGCAGATTTTCAAAGACCATCAAGTTTATCTAATCATACCAAAATTCATACCTATGCTGCAGGTAGAGCTATAGTACAAAGAAATAATATAACAAATATTGAAACGTTTAAAAATATTTCTAATATGCAAGATGTTTCTGTATTGACTGCTATTCAAAGTTTTCAAAACTTTGAAGCACCTCATGTCCAATGGGCTGTACAGGCTTATAATTTTAATAATGATCAAAGTAGTTCTGCTGTTATTCATCCTGATAAAATGGAAACTTTACAAGAGTTTACGGTATTACCTAATGGTGAAGTGGCACAATTTAAATACACTGCACCAAGTTCTCAACCATGCAATTTAGCTTTAAATGATTCACAAAAACTATTAAAGGTAGAAACAGTTAATTTTATTGACAAGGAACAAAAGACATTAGAGTTGAAAGTAGAAGAAAAGAAAACTCATATTTGTAGTCATTGTGGTACAAGTTTTGCAAGAGCATCATCATTAACTTTGCATGAAAAAATACATATAAACAACATTTGTGGGTCTCCTGTAGAATGTGAATATTGTGATAAACAATTTCAGGATATTAATTTTCTTGCAGTTCATCAGACATCTTGTACAAAAAAATTAATGCAGAATAATACAGAAACAATTGTATCAAATATAAAATGGGGAAAACATGTTTGTTCAGATTGTGGAAAAAAATTTGCAACAAAGCAAAAAATGTTTAGACATCAATGGATTCATAGGAAAAAAACTCATTTGTGTGAAGTTTGTGGTTCACAATTTGAAAAACAATTTGAATTAGATGAACATAGACTATCGGCTCATCCAGGTGATTCACCTTTTACTTGTACGGAGTGTGGTAAAAGTTTTGTTTCCCGTCAAGGACTTTGGGAACATGGTAGATCTCATGCAGGTAGTCCAGCTTATTTTCATTGCAATACATGTTCAAAGACATTTTCATCTAGACAAGGTTATTTAATTCATCATCGTACTCACACTGGAGAACGTCCATATGGATGTAAATTTTGTTGGAAAGCATTTCGTGATGGAGGTACATTAAGAAAACATGAAAGAATTCACACAGGAGAAAGACCTCATGTTTGTCCATTATGTACAAGAGCATTTAATCAAAAAGTAGTTTTACGTGAACATGTGAGGTGGGTTCATGCAGCAGGAAAAACAGATATTGATGTTTCTGAACCACCATTTCCCTGTCAATTGTGTGGAATGTTAACTCAAGATCGAGATGAACTTTGTGCACACATAGTTAAGCATTCTGATAAAATGATCGCAGAAGCTAAAGCCAAAAGTAATACTCTAATTGAAAAAAATAAATCACAAAAGAAAAAAAGGGAGTCAAGAATAACACCAATAACCCTTGAAAGACAAACGATTTTAACATCAGAACAGAATCAAGCTCTATTCTCATTAACAGAACAAATGAGTAATTCAACAGAAACACAAGATACCTATTATATAGTTAAAAATGACTATGATAATACGATGTCTGTAGAAACATACACAAATGATATATATCTAGATGAACAAAATGAATCAATTAATATAATATCAATTGCTAAGTCTTCTGATATTGATGGAGAAGTAGAAAAATTTAATGTTATGAATGGAAGAGCAGACATAAACAGTATGCATTTGATACCTTTTAATACATCTGCTCAAACAATTCATATTACTTCAAATACTAAACCAAATAATACCTTACATTTAATATCAAAACAAAATGAAAATTTACCTGTTTTAGCAATACCTAATCCCGAAACAGATACAAATTATTCTAATGAAATGTTAAATGTAAGTAGATCACAAATTTCAAACAAAGAAATAACAAGTTCTCTTATGTATAATAAAAAAAGTAAGGAAAATATTGATACAGAAACAATAATAATTGAACCTATTTCTGTAAAACATAATTATATTCAGCCTAAACAAGTAGAAAATAAAGAAGATACTGATGAGACTAGTGAAGAATTAATATGCGGTATTTGTGGACATAATTTTGGTGATAAAAGTGTACTAATGGAACATGTTAAAGTTCATATCTAA
- Protein Sequence
- MEKNENEKYVNFSLHNVHEGIQDNISHEEICDLADECVVQNNLTEITIENINTKITENQVAVEMLAENSEEDEEHQSIIYPIYIKQKSLQKFTSGDETMAIEALSQLGGTCPLVEEKICCSNCNMTFIHTEFIKHQSVCKFNKPICSTCGEKFERKIDLNNHVVCHQVDRPHACRTCGNLFRSKANLQAHMVEVHQIERPYKCNVCGADFQRPSSLSNHTKIHTYAAGRAIVQRNNITNIETFKNISNMQDVSVLTAIQSFQNFEAPHVQWAVQAYNFNNDQSSSAVIHPDKMETLQEFTVLPNGEVAQFKYTAPSSQPCNLALNDSQKLLKVETVNFIDKEQKTLELKVEEKKTHICSHCGTSFARASSLTLHEKIHINNICGSPVECEYCDKQFQDINFLAVHQTSCTKKLMQNNTETIVSNIKWGKHVCSDCGKKFATKQKMFRHQWIHRKKTHLCEVCGSQFEKQFELDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRSHAGSPAYFHCNTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCTRAFNQKVVLREHVRWVHAAGKTDIDVSEPPFPCQLCGMLTQDRDELCAHIVKHSDKMIAEAKAKSNTLIEKNKSQKKKRESRITPITLERQTILTSEQNQALFSLTEQMSNSTETQDTYYIVKNDYDNTMSVETYTNDIYLDEQNESINIISIAKSSDIDGEVEKFNVMNGRADINSMHLIPFNTSAQTIHITSNTKPNNTLHLISKQNENLPVLAIPNPETDTNYSNEMLNVSRSQISNKEITSSLMYNKKSKENIDTETIIIEPISVKHNYIQPKQVENKEDTDETSEELICGICGHNFGDKSVLMEHVKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -