Sagr017625.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- Zfx
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000001.1:5337901-5344804[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.46 58 4.8 3.3 1 23 175 198 175 199 0.96 2 22 0.021 2.7 9.0 5.0 1 23 207 230 207 230 0.97 3 22 5.9 7.5e+02 1.3 2.9 1 20 236 255 236 257 0.86 4 22 6.7e-05 0.0086 16.9 0.7 1 23 274 297 274 297 0.98 5 22 0.086 11 7.1 1.0 2 23 311 332 310 332 0.93 6 22 2.5e-06 0.00032 21.4 2.1 1 23 363 385 363 385 0.97 7 22 0.0079 1 10.3 0.1 1 23 391 413 391 413 0.97 8 22 1.5e-05 0.0019 18.9 0.3 1 23 419 442 419 442 0.97 9 22 0.29 37 5.4 0.1 5 23 467 485 466 485 0.94 10 22 9.7e-06 0.0012 19.5 1.4 1 23 491 514 491 514 0.97 11 22 0.00022 0.028 15.2 0.2 3 23 613 633 611 633 0.96 12 22 1 1.3e+02 3.7 0.7 1 23 683 706 683 706 0.95 13 22 0.049 6.3 7.9 3.9 2 23 766 788 765 788 0.95 14 22 0.076 9.7 7.3 4.0 2 23 796 817 795 817 0.97 15 22 0.0018 0.23 12.4 0.5 1 23 832 855 832 855 0.96 16 22 0.037 4.7 8.2 1.1 1 23 869 892 869 892 0.96 17 22 5.5e-05 0.0071 17.1 1.9 1 23 898 921 898 921 0.95 18 22 0.00077 0.099 13.5 0.7 3 23 928 949 926 949 0.93 19 22 0.002 0.26 12.2 0.4 1 23 954 977 954 977 0.97 20 22 6.7e-07 8.5e-05 23.2 2.7 3 23 985 1005 984 1005 0.98 21 22 2.3e-06 0.0003 21.4 1.4 1 23 1011 1033 1011 1033 0.97 22 22 1.1e-06 0.00014 22.5 0.2 1 23 1039 1061 1039 1061 0.98
Sequence Information
- Coding Sequence
- ATGCAACATTTCGAGGCCGATTCTGCATCAGCACTGGTTGAGTCACACTGCAACGGAGTGACAGCTGTGTTAGATTACGAGCACCCTGATGATACTGTGGCAACGTCCTCTTCTTCTCCAATCATCATACAAACGTTGGAAAATATACCCAGGGAACCGACAGCTATTATCGACATTATCAGCGTTTCTGATGACGATGCAACTGTCGGTTCTTCGAACGAGTGTAAATCTCAACAACTATACGATAAATCAGAAAATTCCCAAATTCCTCCCAAGACCATGAGCACCTACTTCCTACGTGTTACGACAACAACGTCACCGTCTAGCAAATCCGAAAATATACCCACTGAATTAGATGAGGACCACGAAGATCTCATGTCGAAGCTGGATGTGTATAAGGCTCTGCCTGACGAGTCTGGCTTCTCCTGCGAGTTGTGCAGCCTCAAAGAAATGAAAACGATCATGGAGAGGAAGCCGTTGATTGTGCGCCACTTGTTACGTGCCCACACCTACTGCCATAATTATGAGTGTCCCTGCTGCACCAATACTTATAAAATGGACAATTGGCTGCAGAACCACATGAAAATGGTGCATCACGATGTCGACTGCAGCAAATTCTTTGAGTGCCTTAAGTGCGAGCACAGATGCAAGGACGAGTACCTGTTAAGGTTGCACATGCTCAGGAGGCATGCAGCAATGTACAGGTACGTTTGCAAGTGCTGCGCCAAATGCTTCAAGTCCTGGATTGCGAAGAACGAGCACGAGAAGTTGCAGGAAAAAAACAAGTACAGTCAGTACAAGGTCAAGGGCGATCCCAAGTACGTCTGTGACAAGTGTAGCAAAATACTCAACACCAAGACGGAGCTCATTAAGCATCTCAAAAGGATTCACTCCGATGACTTTTACAAGAACGGCGGCAAAGTGCTCCTGAACTGCAAGCTCTGCAGCAAGCTGTTCATGAGCCGGCGATCGCTGCGCGGCCACACTGCCCTGCACGAGAAATCCAAGTCGATGCCGACAACATCGGAGAGGGCCGGGATGGAGGTGGGGGAGGTGGCCGAGGCAACGGGAGGCGACCAGGTCGGATTCGCCTGCGACAAGTGCGGTAAACGGCTCTCAAGCAAGGACCACCTGAAGAAGCACGCGCGTGTTCACACGGGCGAGCGGCCCTATCCCTGCCTTGAATGCGGCCAGGCCTTCGCTCTGCTCACCACCATGAGGATCCATACGCTTTCGCACTATGGCATCAAGCCCTACCGGTGCCCGCTGTGCGACCTCGCATACTCGCAACGCTCGGCTCTCATGACCCACTGGAAGAGCAAGCATCCAGGACTGCCACCCCCCGCCCCTATCGAGATCCATCAATACTTTGACGACGAAGGCAAGGTCCGCGCCCCTTTCTGTGGAAAAGCCTTTGTATGCATGGCCACTCTCAGAGTTCATTATTTAACTCATGCTAAAGTCAAGCCATACATGTGCAACGTTTGCGGATATAGCTTTACCCAACGTTCATCGATGATGTTGCACTGGAAAAGAAAGCATCCTGATGCCGAAGATCCACCACCTCCTGTGATATTAACCAATTTCTTTGATACCATACAGTATGCCATCGACGAAGCTGATGACGATGCTGACAACAAATTTATCATAGAAGATTCAACTATCAAGACCAGTCTAGCTCTAACGAATTCGTCTAAGTCTTCGTCGATGACACTTTATCAAATTTCTTACATCAATGGTAAAGCTTCATATTCACTCGTTCCTATTAAATCAAAAGAAGAGCTGAAGTTATCTTCGAAAAATAAAAACGATTTTGAAAGTATAACGGAATTGGCTTGCGAAGAGTGCGGTCTAACATTTCCCACAGAAACTCGTTTAAAGTGGCATCGTTCAACTCATAACCCATTGAGCAATCGCAAATCGCCCAAAAAGGCAAAAAGACAGGAAAGTGGATCGAACTTGACCAAATCTCAGAGAAGAAAATCACAGAGGTCCGGCACTGAAGACAAAGAGAAAATAGTTAACCATGTCAAGCCCGGTCTAACTTTTATTTGTCCCTCATGTGAATTTAACACAACTGAGCGAAGTTTGATGATAAGCCATTTTACAACAACGCACTGTTTTAAGTCATCGGATATTAAGTGGGAATCAACTGACCAGATTCTTTTTGAAACTGCTGACGAAGTTGAACAACAGTTCATTACAGAAATGGCCTGTGACTGCTGTGGCTTCACCAGTCAAAATCAGGATGATATGGATTTTCACACGTGTTTACCAAGTGACGAGCAAATGTTGTCGTGCCACCTTTGCACTTTCGAATGTCCCACTAGATCGGGTCTGCAAAGTCACATTACAAGAAAACACAAGCCAAAACCAGACTTACTTGAGTGCTCTGAATGTGATTTTAAGTGTGATACTAAAGCCAAATTCAGTTTACATAGGAAGAAGCATCGACGTGAAGCTGCTAAGGCAGATGGAAAGCAACAATACAACTTCTTCTGTGATGAGTGCGATTTTGTAGCTTCAAGGAAGGGTTCACTCTATTTGCATATCCAAAGGCGGCACAAAGGAACAGAGTCGGTTAAACCGGAGAAACCGAGACTATATCAATGTGACCAGTGCGACTACACCAATAAAAACAAGTATGAAATCAAAGTTCACGTGATCAGAAAACACACGAACGACTACAACCACGAGTGCGAGCAGTGTGGTAAAAAGTATAAAATCAAGGGTGATCTCACGAACCACATAAGATTTCAACATCGAGAACAACCCATAATCTGCGATGTATGCGGCAAAACATGCGGAAACAGCAATTCGCTTTACGTCCATCAGAAGTTCGCCCACTATAAAGCAGAGTTCGAGTGCCCAGTTTGTCATCGGCGAATGGTGAGCCAGGCCAACCTTGACGATCACATCCTGAAGCAACACGAACAGAGAAAGGACGCAATCTGTCAAGAATGTGGTAAGACCTTCACGAGGCACAGCAGACTTAAGATTCACATGAGAATTCATACCGGATTGAGACCGCATTCTTGTAAGATCTGTAATAAGGCATTTGCGAGGAAAACCGCATTAAGACAGCATCTCCTCATTCATACAGGGCAACGGCCTTACATCTGTGACATCTGTGGCAAAGCTTTTACTCAGAAACCTGGACTTATCAGTCATAGGAAAAGTCACCCCGGATCGCTACCACCACTTCCTAGGGTCACCATCGACCATGTTCTCTCGGATCTCCTTACTGAAGAGCAAAATACCATATATTAA
- Protein Sequence
- MQHFEADSASALVESHCNGVTAVLDYEHPDDTVATSSSSPIIIQTLENIPREPTAIIDIISVSDDDATVGSSNECKSQQLYDKSENSQIPPKTMSTYFLRVTTTTSPSSKSENIPTELDEDHEDLMSKLDVYKALPDESGFSCELCSLKEMKTIMERKPLIVRHLLRAHTYCHNYECPCCTNTYKMDNWLQNHMKMVHHDVDCSKFFECLKCEHRCKDEYLLRLHMLRRHAAMYRYVCKCCAKCFKSWIAKNEHEKLQEKNKYSQYKVKGDPKYVCDKCSKILNTKTELIKHLKRIHSDDFYKNGGKVLLNCKLCSKLFMSRRSLRGHTALHEKSKSMPTTSERAGMEVGEVAEATGGDQVGFACDKCGKRLSSKDHLKKHARVHTGERPYPCLECGQAFALLTTMRIHTLSHYGIKPYRCPLCDLAYSQRSALMTHWKSKHPGLPPPAPIEIHQYFDDEGKVRAPFCGKAFVCMATLRVHYLTHAKVKPYMCNVCGYSFTQRSSMMLHWKRKHPDAEDPPPPVILTNFFDTIQYAIDEADDDADNKFIIEDSTIKTSLALTNSSKSSSMTLYQISYINGKASYSLVPIKSKEELKLSSKNKNDFESITELACEECGLTFPTETRLKWHRSTHNPLSNRKSPKKAKRQESGSNLTKSQRRKSQRSGTEDKEKIVNHVKPGLTFICPSCEFNTTERSLMISHFTTTHCFKSSDIKWESTDQILFETADEVEQQFITEMACDCCGFTSQNQDDMDFHTCLPSDEQMLSCHLCTFECPTRSGLQSHITRKHKPKPDLLECSECDFKCDTKAKFSLHRKKHRREAAKADGKQQYNFFCDECDFVASRKGSLYLHIQRRHKGTESVKPEKPRLYQCDQCDYTNKNKYEIKVHVIRKHTNDYNHECEQCGKKYKIKGDLTNHIRFQHREQPIICDVCGKTCGNSNSLYVHQKFAHYKAEFECPVCHRRMVSQANLDDHILKQHEQRKDAICQECGKTFTRHSRLKIHMRIHTGLRPHSCKICNKAFARKTALRQHLLIHTGQRPYICDICGKAFTQKPGLISHRKSHPGSLPPLPRVTIDHVLSDLLTEEQNTIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -