Sagr021134.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sycophaga agraensis
Gene Symbol
-
Assembly
GCA_018906755.1
Location
JACCIE010000006.1:1834365-1839220[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.069 8.8 7.4 0.9 1 23 330 352 330 352 0.97
2 18 0.086 11 7.1 0.6 2 23 397 418 397 418 0.87
3 18 0.02 2.5 9.1 0.3 2 23 482 503 481 503 0.95
4 18 6.1e-05 0.0078 17.0 3.3 2 23 548 569 547 569 0.96
5 18 0.0004 0.051 14.4 1.8 1 23 574 596 574 596 0.95
6 18 0.00041 0.052 14.4 0.8 1 21 603 623 603 627 0.92
7 18 0.0051 0.65 11.0 0.5 2 23 707 728 706 728 0.95
8 18 0.00015 0.02 15.7 5.0 1 23 773 795 773 795 0.97
9 18 0.00022 0.028 15.3 0.7 1 20 800 819 800 821 0.94
10 18 0.034 4.3 8.4 0.3 2 23 832 853 832 853 0.97
11 18 3e-05 0.0039 17.9 1.7 2 23 891 912 890 912 0.97
12 18 2e-05 0.0026 18.5 1.6 1 23 917 939 917 939 0.95
13 18 9.2e-06 0.0012 19.6 1.8 1 23 945 967 945 967 0.99
14 18 3.6e-06 0.00046 20.9 0.4 1 23 983 1005 983 1005 0.95
15 18 5.3e-07 6.8e-05 23.5 0.5 1 23 1011 1033 1011 1033 0.99
16 18 3.2e-05 0.004 17.9 0.2 1 23 1039 1061 1039 1061 0.97
17 18 0.00012 0.015 16.1 4.1 1 23 1067 1089 1067 1089 0.96
18 18 0.0082 1.1 10.3 0.4 1 20 1095 1114 1095 1116 0.89

Sequence Information

Coding Sequence
ATGGATGCTATTGAGGTAAATAGGATAGAGGATTCGCGGCGGCTGCCGCCGAGCGAAGATCACGTCGGCATGGAATCAACGCACCAAGTTGAGATTTGTCGTGTTTGCCTTTTGAGCAGTGCCGTAATGCATGACTTGTTCTACGAAGACGATGCCCTAATGCTGTCAGAAAAGGCAATGAGCCTCACCAATGTTAAGATTGTTCCTGGGGATGGATTACCTTCTCACATTTGCTGTGATTGTGGCGAAAAACTGGAATTGGCTTATAAGTTTAAATTACAAGTTGAACAAGCCGATAATATTTTACGGGAAAAAATAGATTCGCTGAATGCAAAAGAACTTTTTTTTAGTGATGTAGATGTGACCTTGACACAGACAAATGAAGTTGAAGAAATTACTCAAGAAGGTTTACTTTTGAAAGATCACATGGAATTATTAAATAATCACAATATAAACGAAGATAATGTACACAATCAAGAGCAACAAAAACAGTTAAAAAAAGTTAAAAATAGTGAAGATGAAGTACAGATGGAAATTCAAACTGTACATGGAAATCATGAAATACAGCAAATGCCACATGAAGAACATGATCAATCATTTGGAACACAGGAACTTCAAGATATGATGCTGAATGAAATTAGTAATCAGGAAGTAATGCAAGCAGAATTGAATGAAAATCAACAATTGACAATGCATGAACATAATTATGTAGCTGAATCTCAATTATGTTGTATGAATAATGATAATGAATTAAGTTCACAGGAAGAAGATACAAATATAGATAAAGATCTTATAAATGAGCAATTTGAAGTTTATGAACCAACAGTGGAATCCTCAACAACAGAATCAATTAGAAGAAGTCAACGTAAAATCAATGAGCACAGAAATTTGGTTAATCAAAGTTGTGACGAAGAAAATTATTTTGAGAACTTAAATCTTAGTTCTAGATTGAAACAATCTCAATTAGAAAAATTAGAAAAAAATTATTTTGTGTGTTACCTGTGTGATAAGCAATTTTTATCAAAAGATATACTTAAGGAGCATATGTATTCTCATGAAGAGGTTAGAAAGACTCTTTCTATTATGAGTAAATCTTCAGAGAAATTGCAACAGACTCCAGAAAAATCTCAAAATACCAGTGAAAGTCCAATTTCATTTAAGTCACCATCAAGTGGAAAGCAACCAAATACTTGTCCCCACTGTGGAAAAGTGTATCTTTATATAATTCCATACAACAAACATATAAAGCAACATGAGAAAGAAGATAATTCCTCTAAAGAAGATCCTATGCCTTTAGAAGTTTCTTTTCAAGAAGATGATGATACTTTAGAATTCCAAGAATATGATGATAATCATGAACTATATTCTTACAGTGATAATGATGAGAAAAAAGGAGAAGATTCAACTTATATAAAAGAGGAGTTAGAAAAACAAATTTTATTGAACTGTAATGTTTGTGATGAACAGTTTGAGGAGATGGATAAATTAAAAGATCATAGATTGCAGCATGCTGTTGATCGTGTTCTCATTCACCAAGATATACAAAATATTAAAGAATTTAGTCCTGAGCCTCAAATAGAAAAGAAAATTGAAGAGAAAGAATCAACAGAAAGTCCTGTTAAGGAAGATATTAAAGAGTTGAAGTGCCAACATTGCACACAAACTTTTTCAAATAAAAGGTCTTTGGCTAGACATGTAGAGAGTCATAGCAACAACAAATATGTTTGTAAAATATGCCATCAATCATTTTTACGAAAGGATCTGTTGAATCGTCATGCTGAGCAGCATGATGTTCCACTGAAGAGTTTCAAATGTACCCAGTGTAACAAAAGTTTTGGTAATGAACTGACTCTACGTAATCATCTGATCGCAACAAATCACAAAACCATTGTACATGGTCAAGAATATGATCCTAATAAGAGGATAAAGAGAGTAGCTGCCAAGGCTGCTCAGAAAATCATTGATCAGATCAAAACAGATCTAAGTATGGATGACTTTGACGATGTTGAACCAGAAAGTGACAAAGACCAGGATTTTGAAGATGTTAAAGAAGAACCAAATATGACTGAGGATGACGAACCAATGGCATCTAAAAAGCAACGTAATTCCAAGACTCTTTATTGTGCAACTTGTAATCAAAAGAGTCCTTCAAAACAAGCTTTAACGAGGCATATGGAGCAGCATGTGAAAAATGAAATCACAGTTAAACAAGAAAAATTAAAGCAAACTGACGAAAGTCGTGAATGTGAAGAAAATGATGACGACGAGGAGGATGATGATGATTTTGAAGGTGGCCTTGGTTGGCCTATGGATAGTCATGAGTGTACGACATGTAAAAAACGTTATAGTACTAAAAAATCATTACTACGTCATCAGCTATTGCATGAGGAACCAAATTTCGAATGCGATATTTGTAACGTCAAATTTTATAGAAAAGATAAGCTTAAAGCTCATTACGATAAATGTTCAGAAAAAAATCCGGACCAAGTTCGAAAATGTAATATATGTGGCGATTCATTCGAAAATAATGAAATTTTAAAAGAGCATAGAGCAAAACATGTAACAGAGGGAATATTGACGGAAGAAGATCTATTAGATATTGAACCAAGACCAGAAGACAAAAACGGAGAGAAAGCACCGCGAAAAAGGAGAACTGATATCATTGGGCTAGAATGTACTGAGTGCAACAAGCACTACACTTCCAGAAAAGGTCTACTAAGGCATATACAGGTTCATGAGGGTAAGAAGTATCTATGTGATATTTGTCCAAAGAAATTCTACAGGAGGGAACATTTAAAAATACACGTAGCCAAACATAATATGATCAAACCATACAAGTGTTCACGATGTCCAAAGCGTTTTATTAAAGAAGATCAATTAACCAATCATCTGAATAAACATGATAGAGTGCCGAAAAAGGTTAAGGAAGCAGATACTTCGAAGAGATTTTTATGTGAAATATGTTCTAAAAGTTTTACGCAATCTACAACATTAATAGCACATCTAAGAGCTCATAATGGTATTAAGCCTTATGTTTGCGGAGTTTGTACGAGACCTTTTACAACGAATGCGTATTTAAAAATGCACATGAGAACTCACACACAGGAACGCCCGTACATATGTCAATACTGTTCCCGAGCTTTTGCGCGAGCTGATACATTAGCTAATCACCTAACTTCACACACAGGTGAAGCTAAATATCATTGCAAATATTGTCCAAAAAATTTCAGAAGATTGAAATCTTTAAAAGAACATGTTTTTATACATACTGGACAACGTCCTTATGCTTGTCCTACTTGTGACAGGAGATTTAATAATAATGGCAGCCGATATGCTCACAGCAAAAGGTGTAAACAGAACTTACTTCAAACTAGATCATCACAGATGACTGATGAAGGTATAAATATTGATCAGGATATGCAAGAAATTCATGAAATTCACGAACAAGAGGAACAAGATCAGCTACAATTGCAGGAAGAACAGGAAATCGAGAATCAACTGCAATCGCAAAGGTTACATCAAGCGACAATCAGCCAAGCACAACTAATTAAGCCCCAAAATATTAAAACAATTACCATTACAAGGCCAGATGGAGCTCAGCAGCATGTTATGGCACATCAAGAAATTCTAATGCCGTTAATATTACCACTTACAGTGACGTTAACAGATGTAGGTGAAGAAGTGATTCTTCCTGAAGGAACAAAGATTTTTACAGCGTAA
Protein Sequence
MDAIEVNRIEDSRRLPPSEDHVGMESTHQVEICRVCLLSSAVMHDLFYEDDALMLSEKAMSLTNVKIVPGDGLPSHICCDCGEKLELAYKFKLQVEQADNILREKIDSLNAKELFFSDVDVTLTQTNEVEEITQEGLLLKDHMELLNNHNINEDNVHNQEQQKQLKKVKNSEDEVQMEIQTVHGNHEIQQMPHEEHDQSFGTQELQDMMLNEISNQEVMQAELNENQQLTMHEHNYVAESQLCCMNNDNELSSQEEDTNIDKDLINEQFEVYEPTVESSTTESIRRSQRKINEHRNLVNQSCDEENYFENLNLSSRLKQSQLEKLEKNYFVCYLCDKQFLSKDILKEHMYSHEEVRKTLSIMSKSSEKLQQTPEKSQNTSESPISFKSPSSGKQPNTCPHCGKVYLYIIPYNKHIKQHEKEDNSSKEDPMPLEVSFQEDDDTLEFQEYDDNHELYSYSDNDEKKGEDSTYIKEELEKQILLNCNVCDEQFEEMDKLKDHRLQHAVDRVLIHQDIQNIKEFSPEPQIEKKIEEKESTESPVKEDIKELKCQHCTQTFSNKRSLARHVESHSNNKYVCKICHQSFLRKDLLNRHAEQHDVPLKSFKCTQCNKSFGNELTLRNHLIATNHKTIVHGQEYDPNKRIKRVAAKAAQKIIDQIKTDLSMDDFDDVEPESDKDQDFEDVKEEPNMTEDDEPMASKKQRNSKTLYCATCNQKSPSKQALTRHMEQHVKNEITVKQEKLKQTDESRECEENDDDEEDDDDFEGGLGWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILKEHRAKHVTEGILTEEDLLDIEPRPEDKNGEKAPRKRRTDIIGLECTECNKHYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCSRCPKRFIKEDQLTNHLNKHDRVPKKVKEADTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCGVCTRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQTRSSQMTDEGINIDQDMQEIHEIHEQEEQDQLQLQEEQEIENQLQSQRLHQATISQAQLIKPQNIKTITITRPDGAQQHVMAHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-