Sagr017631.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- -
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000001.1:5359639-5363912[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00092 0.12 13.3 0.4 1 20 114 133 114 134 0.94 2 20 0.0002 0.026 15.3 0.4 1 21 152 172 152 173 0.96 3 20 7.1e-05 0.009 16.8 1.7 2 23 209 231 208 231 0.94 4 20 0.3 38 5.4 0.1 2 23 236 258 235 258 0.93 5 20 0.0024 0.3 12.0 0.7 3 23 266 286 265 286 0.95 6 20 0.00011 0.014 16.2 2.9 2 23 294 316 293 316 0.93 7 20 7.4 9.4e+02 1.0 3.2 1 23 325 347 325 347 0.95 8 20 0.0012 0.15 13.0 0.4 2 23 354 374 353 374 0.97 9 20 4.5e-05 0.0057 17.4 0.2 3 23 382 402 381 402 0.95 10 20 3.6e-05 0.0046 17.7 4.1 1 23 408 431 408 431 0.95 11 20 0.018 2.3 9.2 0.5 1 23 557 579 557 579 0.94 12 20 3.8e-05 0.0048 17.7 2.6 1 23 585 607 585 607 0.98 13 20 5.9e-07 7.6e-05 23.3 0.1 1 23 613 635 613 635 0.98 14 20 0.0025 0.31 11.9 2.7 3 23 643 664 642 664 0.96 15 20 4.8e-06 0.00061 20.5 1.6 1 23 669 691 669 691 0.97 16 20 7.7e-06 0.00098 19.8 1.5 1 23 700 722 700 722 0.98 17 20 2.5e-06 0.00032 21.4 1.0 1 23 728 750 728 750 0.97 18 20 6.6e-05 0.0084 16.9 1.3 2 23 757 778 756 778 0.96 19 20 1.9e-06 0.00025 21.7 1.7 1 23 784 806 784 806 0.98 20 20 3.3e-06 0.00042 21.0 0.7 1 23 812 834 812 834 0.98
Sequence Information
- Coding Sequence
- ATGCGAGTCCCAGCGATCTTGCAACGAAAGCGAAACATTGGGATCGCGAGCGAAGAAACGGTAGATCTAAATCAAGAATCGACAGAACTCACACATACTTCCTTTGTAGTCACAAATTCCCTTCACTCAGTATTGAATAGTATGAACCACGTGATACTTGTAAAGCCAATGGACTCTTCATCCATCGGACAAACTTCCTTTACAATTATATCCTCAGATCTTGAAGATGAAGTGTGTCAAACTAAAGAACTTCAATCTTCGCAATCTCCGAAATTAAAAATCGATGAAATTCTATTAAAGCAAGATAATCAAGATCTTGAAGTTGACCATTCGAATATATTCCATTGCGAGTCGTGCGACGAATCATTTAATGATCGTTCGGCTCTTATAATTCACAAGACTGAAAAGTCAATCGTACGAACACGCGCCGCCTTACGCGAACCCGTGGTTAAATATAACTGTGATATTTGCAAACGATTGTTCACGTCGAACGGTATGCTCGCTCGCCACTATCGAAACTGCGGCGCTGTCGAGCTGGAGTCGTTATTACCGAGCGTTAGGCGACGTCGCGCTCGTAACGCAATTGAAGATATGCCTATAAAAAATAAGGACAATGAGCCCTCGACATGCAACAAATGTGGCAAGATCTTTAAGAAAGACAAGTATCTCAAAACCCACATGACCCTGGTGCATAGCGAGCACCTAAATTGTCAGCTTTGCGAGGCAAAGCTCGAATCGGTTCAATTACTGAAGGCTCACATGAACCAAGTGCATAGTGGCGACTTTACTGAATTTTGTAGCATTTGCAACAAGGGCTTTTATCTACGCCAGTCGCTCAAGGTTCACTTGACGGCACACTCACGCGACGATAATCCCTGTGTCTGTGAAGTCTGCCAAAAGAGCTTTCGTCACGAGGTCTATTTGCGAAAGCATGTGCAGCTCGTTCATGTAGAAATGAAAGATCGGAAGAAGTACCACTGTGACGCATGTGGCTATAAGACTCAGTACAAAACCGTCTTTAGAGAGCACGTATATAAACACACGGGCGAGGATCAGGTGCAATGCGGAGTATGCGGAAAAAGTATGCGGCGCAGCTATCTTAAGATGCATTTAAGAATTCATACGGGTGAGAAACCGGAGATTTGCGAGTACTGCGGTAAAGCTTTTACTGCGAGAAAGTACCTGACTAAGCATTGGGTGGTGCATACTGGCGAGAAGCCTTATCAATGTCAGATTTGTGGTAAAAGCTATACCCAGAAGGGCACGCTTACTCTACATTGCAGAAAAAAGCATCAGCAACCAGTTGTGCTGAATGATGAGCTGAATCTAGAAATAATAGAAAAAAGTGATATACAAATCAAAGATAATGTTGAAGAGAGAGAAGCTGCTCAAGAAGATGAACAACTAGGTGTAAATCAAGCTGTTCTTATGGACACAATTACGAATATAGAAGAAATATCAGAAGAAATACAAACTTTTGATGATGAAAATATGATAGAAAATCATGAAGAAGTTATCGATGGCGAATTCGAAAGACATTTGATCGATTTGGAGCTGGTGAAAGCTGTGAAACCCGTAATAACACAAAATCAAATGTTGGATTCCTCATCTGAAGCCTGTGAAAAAACTAAGCCTACTTTAAATGATCAACAAATCGAATATCCTGGGTACCAGTGTTTGCTGTGCTCGAAACGCTTCAAGGCGAAGAACTTGTATGACGGACACATGATAGCTCATAGTGACGCCCGGCCTCATAAGTGTGACATCTGTTTAAAGTCATTCAAACGTACCAATACTCTGGCAGTGCATAGGCGCATCCACACGCACGAGCGTAACTTCGTGTGTGACGTCTGCGGTCGGGCCTTTGTTCAAGCTTCTCAGCTCGGTACCCACCAACGCCGGCACTTCGAACGGTACACGCGCCATTGCGATCTTTGCAACAAGGGCTTCTTTACCAACGCCGAGCTCCATGGACACATGAACGTGAAGCATGGAGCGAACGAGCATGTATGTGCCCTCTGTGGCAAGTCCTTCCCCAACAATCACTCACTCGCACGACACGCCAAAAGCCACGAGCCAGACTTCGAGCCCGTCAAGCACCAGTGTGAGTTCTGCGGCAAGACCTTCGCCTACAGGAACTCCCTCGTGGCCCACGTTAAATCACACACGGGCGAGAACAAGTATGATTGCCACTTGTGCGGTAAATCCGTTTCCTCAAAGGGCTCGCTCCAGGATCACTTACGACTTCACGGCGGCGAGAAAAGTCTCATATGTGATGTGTGCGGCAAGGCCTTCCATAAGAGGACGACTCTCGTTGTTCATAAGAGAACCCACACCGGTGAAAAACCTTACATCTGCGAAACTTGCGGCAAGGCCTTCACGCAGCATTCAACTTTGGTCATACACAGGAGATACCACACCGGTCAGAAGCCGTATAAATGCACTACCTGTAACAAATCCTTCGTATCAAAGGCATTACTTAATGGACACGTCAAAATTCACACAAGATTCGACGCATGA
- Protein Sequence
- MRVPAILQRKRNIGIASEETVDLNQESTELTHTSFVVTNSLHSVLNSMNHVILVKPMDSSSIGQTSFTIISSDLEDEVCQTKELQSSQSPKLKIDEILLKQDNQDLEVDHSNIFHCESCDESFNDRSALIIHKTEKSIVRTRAALREPVVKYNCDICKRLFTSNGMLARHYRNCGAVELESLLPSVRRRRARNAIEDMPIKNKDNEPSTCNKCGKIFKKDKYLKTHMTLVHSEHLNCQLCEAKLESVQLLKAHMNQVHSGDFTEFCSICNKGFYLRQSLKVHLTAHSRDDNPCVCEVCQKSFRHEVYLRKHVQLVHVEMKDRKKYHCDACGYKTQYKTVFREHVYKHTGEDQVQCGVCGKSMRRSYLKMHLRIHTGEKPEICEYCGKAFTARKYLTKHWVVHTGEKPYQCQICGKSYTQKGTLTLHCRKKHQQPVVLNDELNLEIIEKSDIQIKDNVEEREAAQEDEQLGVNQAVLMDTITNIEEISEEIQTFDDENMIENHEEVIDGEFERHLIDLELVKAVKPVITQNQMLDSSSEACEKTKPTLNDQQIEYPGYQCLLCSKRFKAKNLYDGHMIAHSDARPHKCDICLKSFKRTNTLAVHRRIHTHERNFVCDVCGRAFVQASQLGTHQRRHFERYTRHCDLCNKGFFTNAELHGHMNVKHGANEHVCALCGKSFPNNHSLARHAKSHEPDFEPVKHQCEFCGKTFAYRNSLVAHVKSHTGENKYDCHLCGKSVSSKGSLQDHLRLHGGEKSLICDVCGKAFHKRTTLVVHKRTHTGEKPYICETCGKAFTQHSTLVIHRRYHTGQKPYKCTTCNKSFVSKALLNGHVKIHTRFDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -