Sagr020677.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- ZNF219
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000014.1:2930024-2934566[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 6.6e-06 0.00085 20.0 2.4 1 23 76 98 76 98 0.99 2 23 3.7e-06 0.00047 20.8 2.2 2 23 105 127 104 128 0.94 3 23 0.05 6.4 7.8 0.5 1 23 133 155 133 155 0.99 4 23 8.5e-06 0.0011 19.7 2.6 1 23 161 183 161 183 0.96 5 23 0.00024 0.031 15.1 0.6 1 23 189 211 189 211 0.98 6 23 1.1e-05 0.0013 19.4 1.6 1 23 217 239 217 239 0.99 7 23 0.14 19 6.4 0.1 1 18 245 262 245 262 0.92 8 23 0.0089 1.1 10.2 0.2 1 23 280 303 280 303 0.97 9 23 2.7e-08 3.4e-06 27.6 0.3 1 23 317 339 317 339 0.98 10 23 0.00014 0.018 15.9 1.9 1 23 366 388 366 388 0.99 11 23 3.1e-05 0.0039 17.9 0.4 2 23 395 417 394 417 0.91 12 23 0.0046 0.59 11.1 0.1 3 23 425 445 423 445 0.97 13 23 5.2e-05 0.0066 17.2 0.3 1 23 451 473 451 473 0.98 14 23 1.5e-05 0.0019 18.9 0.4 1 23 479 501 479 501 0.96 15 23 0.0058 0.74 10.8 0.0 1 23 507 529 507 529 0.97 16 23 0.00011 0.014 16.2 0.9 1 23 535 558 535 558 0.98 17 23 1.1e-05 0.0014 19.3 1.8 1 23 680 702 680 702 0.98 18 23 0.00031 0.04 14.8 3.6 1 23 708 731 708 731 0.96 19 23 0.00012 0.015 16.1 1.6 1 23 737 759 737 759 0.96 20 23 5.1e-06 0.00066 20.4 0.8 1 23 765 787 765 787 0.98 21 23 0.017 2.2 9.3 3.1 1 23 793 815 793 815 0.98 22 23 3.6e-06 0.00046 20.9 1.0 1 23 821 843 821 843 0.97 23 23 5.9e-05 0.0075 17.0 1.8 1 23 849 872 849 872 0.97
Sequence Information
- Coding Sequence
- ATGCAGTTAAAATTACAAAATGGATCAAAATGCGTGAGTCTCGAAGACGCCGGGGTGTTCACCATCGTCACAACGGCGAACCAAGAAACTTTGGACCCCTTGACGAGGACGGAATTCAAATCAGAGGGACAGACCGAGTCGGATACGGGCGCCAAGTGTTACGAAGCGAACCAACGGCGCCTGGAGGTGGCTAAGGCGAAAGTCACCATCAACGGGATGACGCTGTTCAAGTGCCCCGAGTGTCCGAAGCACCTCTCTACCTCGTACAACTACTTCGCGCATCGGCGCGTGCACACGAAGGAAAAGCTCTGCAGGTGCGAGGTGTGCGGTAAGGGTTTCACCGCGAGTAGTTCCCTGACGCGGCACATTCGCGACGTCCACCACAAGATCAAGGATTACAAGTGCGGATTCTGCGAGCGCAGGCTCGCCTCGAGGGTGGCGCGCGACGAGCACCAACGCACCCACACGGACGAGCGGCCGCATGTCTGCGACACCTGCGGCAAGAGCTTCAGGCAGCGAGCCTCCCTCTCCGTTCACAAACGCTTTCACTCCAAGAGCTTTCTCTTCGAGTGCAGGTTGTGTCAGCGCGGCTTCCCCCGCAAACAGGACATGGAGCGCCACGAGCTCACCCACACCGACCAAAGGCCCTACAAGTGCAAAGTGTGCAGCAAAAGCTTTAGAAGCTCCGCCTCGGCTATCAGGCACAGGCAATCTCACGATCTGGTCCACAAGCACATATGCGAAATCTGTGGAGACAGTTTCGTCCAGGCGCGATATCTCAAAAAATCACAAAAGGAGATTCCGAAAGCGGAGCGAGGCTCCGCGAGTATGTATACGTACATGTGCGGCGTGTGCGAAGAGCTTTATACCGAGGAGTTCGAACTGATGCGTCATCTGAAGCGAGATCATCTAGTGACGGCGGACCGCGAAACCCTGAGCACCATCCGCTACGAGTGCAACATCTGCAACAAGTCGTTCGCGCGCAAGGCCAATCTGATCAACCACCTGCAGGTGCACAAGGACTGCGTGGAGAGCGAGCTCGAAACCAACCGCCTGGCCCAGTCGCGGCTGAAAACGTTCAAGAGCGGCCACCAGTACCAGTGCGATCTTTGCAAGCAGGTCCTTTCGCACCGGCGCGCCTTCCTGCGCCACATCCGCGTGCACACGGACGAGCGGCCGGTCATGTGCCACGAGTGCGGCAAAAACTTCCGAATCGAGGACGACCTCAAGCGGCACATCGACGACGTCCATCGGAAGATCAAGCGCTACGGCTGTGACATCTGCGGCACTTCTTTCGCGGGCAAGGGCACCCGGGACGCCCACCGGCGCATCCACACGGGCGAAAAGCCCTACCCCTGTCCCACCTGCGCCAAGAGCTTCCGCTCGCTCAATCTCTTGGGGGTGCACAAGCGTACTCACACCAACTACCGACCTTTCCAGTGCAATTACTGCGATAAGGCTTTCAGGGCAAAGCAGAAACTCAACGCTCACGAAGCCATCCACACTGGGATTAGGCCCTACCCATGCGACGTTTGTGGCAAACTCTTTGCGGCCAAGGGCGAGGCTTCGAGGCACCGGACGGTCCACTTCCCTGACAAACCCTTCCAGTGTTCAGTCTGCGGGGTCGGATATCGTCTCAAGCGCTACCTCAAGACCCACATTAAGATGCAACATGAGGATACGGCTGAAACTCTTCTCAAATCAAAAGGATCCCAACATGCCAGTAGCAGTTTCAAAGAGTTTCAAAAAAGTTTTAAACCCGTACTTCCAGCCACTAAAGGTCGAAAGAAGGTCCAGTCAACCACAAAATCTACGAGAAAGCGAGTAAACCGGGGATCGAAGAAAAAGCCCGTAAAAATGCTTGGGAAAAAGAAAACACCGTCGAAGCCGGATATAGAAACGTTTGGGACTCAATTAAAAGTTGAAGTGGAAATGGACAGTGATACTAACAATCAAAGCTCCGATCTTGAGTGTGAAGCATTAGATACTGATAAAAAGCCTAAAAAGAAGTCACAGCGGAAGCTTAACGCGTCGAATTTCGAGTGCAGCCAATGCAACAAAAAGTTCCGCATGTATGCCAGCTATCAGGTTCACATGCGAATACATACAGGAGAGAAGCCATACACCTGTCATATATGCGGTAAACAGTTTGGTCAAACTGGCAGTCTGTACTACCATCTCAAGCACGTTCACGGAGGAGTCAAAAATCACGCCTGCGATATTTGTGGTCGTTGCTTTGCGATGAAGACAGCAATGGAAGATCACCGAAGGATACACACGGGTGAACGGCCCTATGTTTGCGACTCCTGCGGTAAAACCTTCAAGACAAAGGCTTCACTTTATATTCACAGTAAAATTCATACGAACGAATATCCTTTCAAGTGCTCTTACTGCAAGAAATTGTTCAGATGGAAGCAACAGATGATTAGTCATTTAACGACCCACACTGGCGAAAAAAACCATATCTGTGACGTTTGTGGCAAAGGGTTCGGAGTCAAAAATGAGCTAACTAGGCATAGACGAACCCATTCCGTAGACAAACCTTTTACTTGCCAAAAGTGTGGGGTTAGTTTTGGTCAAAAGAGATATCTAACAAATCATAATCGAATAAGACACAAGATAAAAGCTGAAGACAATTGA
- Protein Sequence
- MQLKLQNGSKCVSLEDAGVFTIVTTANQETLDPLTRTEFKSEGQTESDTGAKCYEANQRRLEVAKAKVTINGMTLFKCPECPKHLSTSYNYFAHRRVHTKEKLCRCEVCGKGFTASSSLTRHIRDVHHKIKDYKCGFCERRLASRVARDEHQRTHTDERPHVCDTCGKSFRQRASLSVHKRFHSKSFLFECRLCQRGFPRKQDMERHELTHTDQRPYKCKVCSKSFRSSASAIRHRQSHDLVHKHICEICGDSFVQARYLKKSQKEIPKAERGSASMYTYMCGVCEELYTEEFELMRHLKRDHLVTADRETLSTIRYECNICNKSFARKANLINHLQVHKDCVESELETNRLAQSRLKTFKSGHQYQCDLCKQVLSHRRAFLRHIRVHTDERPVMCHECGKNFRIEDDLKRHIDDVHRKIKRYGCDICGTSFAGKGTRDAHRRIHTGEKPYPCPTCAKSFRSLNLLGVHKRTHTNYRPFQCNYCDKAFRAKQKLNAHEAIHTGIRPYPCDVCGKLFAAKGEASRHRTVHFPDKPFQCSVCGVGYRLKRYLKTHIKMQHEDTAETLLKSKGSQHASSSFKEFQKSFKPVLPATKGRKKVQSTTKSTRKRVNRGSKKKPVKMLGKKKTPSKPDIETFGTQLKVEVEMDSDTNNQSSDLECEALDTDKKPKKKSQRKLNASNFECSQCNKKFRMYASYQVHMRIHTGEKPYTCHICGKQFGQTGSLYYHLKHVHGGVKNHACDICGRCFAMKTAMEDHRRIHTGERPYVCDSCGKTFKTKASLYIHSKIHTNEYPFKCSYCKKLFRWKQQMISHLTTHTGEKNHICDVCGKGFGVKNELTRHRRTHSVDKPFTCQKCGVSFGQKRYLTNHNRIRHKIKAEDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -