Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.018 61 4.1 2.6 18 43 81 103 72 104 0.87

2 8 0.0031 11 6.6 0.5 17 43 109 132 105 133 0.86

3 8 0.02 67 4.0 1.1 17 43 138 161 134 162 0.81

4 8 3.5e-06 0.012 16.0 1.2 2 44 152 191 151 191 0.91

5 8 0.49 1.6e+03 -0.5 0.3 19 29 197 207 195 217 0.83

6 8 3.5e-05 0.12 12.8 0.4 12 40 218 243 212 246 0.83

7 8 0.027 91 3.6 0.1 19 33 253 266 250 274 0.80

8 8 0.0063 21 5.6 0.1 18 38 280 297 278 302 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.018	61	4.1	2.6	18	43	81	103	72	104	0.87
2	8	0.0031	11	6.6	0.5	17	43	109	132	105	133	0.86
3	8	0.02	67	4.0	1.1	17	43	138	161	134	162	0.81
4	8	3.5e-06	0.012	16.0	1.2	2	44	152	191	151	191	0.91
5	8	0.49	1.6e+03	-0.5	0.3	19	29	197	207	195	217	0.83
6	8	3.5e-05	0.12	12.8	0.4	12	40	218	243	212	246	0.83
7	8	0.027	91	3.6	0.1	19	33	253	266	250	274	0.80
8	8	0.0063	21	5.6	0.1	18	38	280	297	278	302	0.75

Coding Sequence: ATGGGGTTGAAAGAGCCGTGCGACGATGAAGACGTTGAGAGTCAGGCAGTGGTCCTCGCAAAATTAAAAAGCAAGCCGTTAAGGAGGGCGAAACGGACGCGTGTACCGCAAGCACAATCGGAAGTTGCGTCCAGCAGTGTCAGAGCGCCGCGACGTGGTTTGCGGAAGCCCCAGGAGCCTGCGGATGTCTTCGAGGGCACGCAGGGAAAACGCAGTCAGCAGACCAAGTGTTGGGCCTTCCGCTGCGAACACTGCAACCACGTATTTAAAAAGCGTAAGCAACTGCGCGAGCACGTGGCCGAGGCCCACGAGGCCATACCCAAGTACGTCTGCGGCGAGTGCGAGAGCGTGTTCAAGTGTCGGCAGTCGCTGCGTGAGCACCTAGTGCGCAAGCACACCGAGGGCTTCCGGTTCGTCTGCGCCGCTTGCGGGAAGAAGTTCAAAATGAAGAGCGACCTGTATATGCACGTGCAGAGCATTCACAGCGACGAGCGAGAAGCCGTGTGCGACGTCTGCGGCAAAACCTACCGGAACGCCTTCGCCCTCAAAAAGCACCTGGCCCACGCGCACAATCAGCGGCCTTACGCCTGCGAGGTCTGCAAGCGCAAGCTCGCGACGAAGGAATCCCTCGAACAGCACGCCCTCCTCCACCTTAAGAAGGAGCGGGCCGTGTGCCAGGTCTGCGGCAAGACCTTCAGCGGCAACGACGCCCTCAAGAAGCACATGCGCATACACACAGGGGTGCGACCATTCCCGTGCCAAGTATGCGGCAAGGCCTTCCGCAGGCAAAACACACACAAGCAGCACCTGCTGACGCACACGGGCGTGCGGCCGTACGTATGCGACATTTGCGGCAAGAGCTTCACTCAAAAGCCTGGCCTCATTACGCACCGCAAAAAGCACCCAGGACCCCTGCCACCCTTGCCACCTGTCTCCATAGACTACGTCATTGCCGACCTCATGCAGAAGACTGAGGCCAAGAGCAGCCTCCTAGATGCATAA
Protein Sequence: MGLKEPCDDEDVESQAVVLAKLKSKPLRRAKRTRVPQAQSEVASSSVRAPRRGLRKPQEPADVFEGTQGKRSQQTKCWAFRCEHCNHVFKKRKQLREHVAEAHEAIPKYVCGECESVFKCRQSLREHLVRKHTEGFRFVCAACGKKFKMKSDLYMHVQSIHSDEREAVCDVCGKTYRNAFALKKHLAHAHNQRPYACEVCKRKLATKESLEQHALLHLKKERAVCQVCGKTFSGNDALKKHMRIHTGVRPFPCQVCGKAFRRQNTHKQHLLTHTGVRPYVCDICGKSFTQKPGLITHRKKHPGPLPPLPPVSIDYVIADLMQKTEAKSSLLDA

Sequence clustering based on sequence similarity using MMseqs2