Sagr015751.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- bab1
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000011.1:3893464-3895825[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4.7e-07 0.0012 18.9 0.0 2 38 205 240 204 246 0.89 2 5 1.1e-13 2.8e-10 40.1 0.0 1 39 254 291 254 298 0.86 3 5 4.7e-05 0.12 12.4 0.0 6 34 311 338 308 344 0.90 4 5 0.84 2.2e+03 -1.2 0.0 31 45 352 367 352 367 0.88 5 5 2.3e-12 6e-09 35.9 0.0 4 39 369 404 366 409 0.92
Sequence Information
- Coding Sequence
- ATGTCTGAGTCGGCAGCGGCTTCGACGACAAGTAACCAGACGCAAGTCGACACCTCCTACTGCTTCAAGTGGAGCAATTACCAGAGTCATCTTTCCGAGGTCGTTCGCCAACTGCTTGAGGAAGAATGCATGGTCGACGTAACACTTTACGCGGGAGGAGAACGCATCCAGGCTCACCGCCTCGTTTTATGTGCCTGCAGTACATTGTTCCAGGAAATTCTAAGCCAGGTTAATGAAGAACATCCAACTGTAATTTTAAGTGACATTTCTCCACAAGATGTACGATCAATTGTGGAATTCAGTTATAATGGGGAAGTTCGTATTCCTGTTGAAAATATCAATAATTTATTGGATGCTGCACATTCGTTGAAAATTTGTGGATTAATGGAAATTGAAGGTCTTGATGAATCTGAAATTCCTAACGATAAAGAAATATATAATGAAGAAACATACCTATTGAATGAACTAACTCAAGAGGATAATGAGGAAATTGAATCATTTGAAACAGAAAATAAAGAAAAGATTAAAGAAAATAAAAGAAGAAATTCAGAAGAGGATTCAGATTTTGCAAGAAGGAAAAGAAGAAAAAGTGTTTGTAAGAAAGAATATAGCGATGAAATGTTAGCAGCTGCCATTAATGATATTCGTTCTGGGCGCTCGTTACTGGATGCAGCTGCTAGAAACCATATTCCTCGATCAACTCTTTATATGCGTGCAAAAGTTTTAGGAATTCCACTAAATCCTTCGAGAAGTGAATATACAAATGAAGATATGAAATTAGCAATAAATGCAGTTATAGGTGGATCCAGCTTGCAACAGGCTTCTGATTGTTTTGGAATACCTAAAACGGTTTTGTGGAGGAGAATTCAAAAAGAAGGTCTTCAAACATCCAGACACGAAACAAGAAAAAATTATGGGGCTGAAAAAAGAGAAGCTGCTGTAAAGGCATTGCAAAGAGGAGAAACTCTTACAAAAGTTGCTAATGAATATAAAATTCCTAAAACAACATTATTCAGAGATAAAGCTCGTCTCGTTGATGAAGGAAAATTACCGTCATCATTTTGGAAGAAACGCAAAAGTGAAGGAGAAGACCAAAAACGGTCGCGCCTTGAAGAAGCTGTGGCTGCGTGCAAAGATGGTAAAATGTCGCAAGCATCTGCTTCTGTAACATATCAAATACCTAAAACTACTATATGGAGGCGTCTCCAAAAAGATATAGCTAAGAATTCTGGAACAGTACAATCAGTTAAAAGACAGCCAAAGAAAATCGAAACTTCTAATAAAAACAATACGGAATTTATTAAATCTGAAGTTTTGCATGAAAACGATTTTGAAACCTATTGTCCAGGAGATACAGACATGAATATAACATATATTGATGAAAACAATATGTCAGATGATCCAGTAATCATTCTATCTAGTGAAGATGTGGATGAATTGAATTTACAAAATAATAGATCTTTAGTAGTTGTACATGGCAGTGAAGACAATTTTATATCATGTGGCTTAGAATTAGATGCCAGTACAACTTTTGAAGCAAAGAGTTAA
- Protein Sequence
- MSESAAASTTSNQTQVDTSYCFKWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNEEHPTVILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEIPNDKEIYNEETYLLNELTQEDNEEIESFETENKEKIKENKRRNSEEDSDFARRKRRKSVCKKEYSDEMLAAAINDIRSGRSLLDAAARNHIPRSTLYMRAKVLGIPLNPSRSEYTNEDMKLAINAVIGGSSLQQASDCFGIPKTVLWRRIQKEGLQTSRHETRKNYGAEKREAAVKALQRGETLTKVANEYKIPKTTLFRDKARLVDEGKLPSSFWKKRKSEGEDQKRSRLEEAVAACKDGKMSQASASVTYQIPKTTIWRRLQKDIAKNSGTVQSVKRQPKKIETSNKNNTEFIKSEVLHENDFETYCPGDTDMNITYIDENNMSDDPVIILSSEDVDELNLQNNRSLVVVHGSEDNFISCGLELDASTTFEAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464086;
- 90% Identity
- iTF_01380084;
- 80% Identity
- iTF_01380084;