Sagr002733.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- -
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000084.1:48543-54434[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.6e-13 2e-09 37.4 0.0 1 39 475 514 475 518 0.90 2 4 6.1e-12 1.6e-08 34.5 0.0 2 39 530 567 529 570 0.94 3 4 8.5e-19 2.2e-15 56.4 0.0 2 45 585 629 584 629 0.97 4 4 9.7e-19 2.5e-15 56.3 0.1 1 42 636 678 636 679 0.97
Sequence Information
- Coding Sequence
- ATGGGGCGCGAACCCGGGGCGCAAGAAAATCGCCGCTCACTGGGCCATCGCCCCCCCCCGTCGACCGGCTCCCACCTGCCCCCTCCACCGATGTATCCCGCGCGCGCCCCGGACAAATGGCACGTCGCTGCGGTCGACTCGAGGGCCGCCGGAAAAGGAACTCGCTCCACGGGGTTAAGAGGCCGAGGACCGGCGGAGGAGGTCGGGGGCAGGGGAAGGGGCCGCAAGCCTGGATGGCCCCGTAAGCGGCCTTTGGCGCCCGGTCACCCCCTCGCAGCCCCAGCCGGGGCCTCTGCCACCGGCGAGCGCACCGGCAGAGGGAAAGCCGGGGCGAACCGGAAGCCGGGGGGCTCCTTTAATCTCGGGCCGCCCCGGGGAGGAGGCCATGAGCCCCCGGGACTCGTGGGTCCAACTAACAGCGCCTCTCTCTTCTGTCCCCAGTCGCTCCTGAAGACGGCCGATCAGCTCAAGATCAAGGGCCTCTGCGAGGTGCCCGAGAGCAGGGAGGGCCCCTCGGTCAGCCTGACCTCGCCGCCCCGGGACTCGAGCACGCCCCGGCTGAACTACGCCAAGCTCAAGCGCCACCACCCGCGGTACAAACGGCCGCGCTACGAGGGCGGCGCCGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCTCCGGCTCCGGCCCAGGCCCCGGCCGCCCGCGGATCGCTCCAGCCGGCGCCCTCGGCCCACTACCACTACCTGCACCAGCAGGCCCACCACCGGCGCCGCTCCCCAGAGCCCAGGTACAAGGAGGACGACTTCGTCGAGAGCTACGTGCGCGACTGCAACAAGGAGAACCGCCGGGACTGCTGGCCGGCCGAAGATGACGAGTGCGCCGAGGCCGCGCCCCGGGCCGCCCCACTAGCCCCGGACGCCTGCCCGCGCGCCGCCACCGGCCCCCCAGGAGGCGCCCCGGACAGCAGCAGCAGCCCCAGCGCGGACAGCCACGCCGCCGCAGCGGCCACCAACAACAACGGCGACATGTTCTGTCACACAGGTCTCGGTCACTATGGCCACCACCCGGACCCGGGCGAGGTCGACCTCCCGCCCGAGACGCAGCCGACGCCGCCGAGCGCGACGCTCGTCGGCACGACTATCACGCACCTGCGGGACCCGGATCACCACACGGCAGACATCCAGAACTGCGACAGCGTCAAGATCAAGTTCGAGACGCTCCACACAATGGACTCTTCCGACACGATAGACATTGACAGCCACATGTCCGACCGGGCTAGCGTCAGCTCCAAGAATGCCGACGACAATATGATGATGATAACGCCGGAGCTCCTGGGCCTCATGCCTTCCGGGAGCTCCGTGCACTCCGACTCGGGCGAGAACAACTCGCGCAGTCACTCGGGCCAGTCGGCCTCGCACCACCACGGCTCAAAGTCCTGGACCCAGGAGGACATGGACGCGGCCCTCGAGGCCCTGCGCAACCACGACATGAGCCTGACCAAAGCTTCCGCTACCTTTGGCATCCCCTCGACGACGCTGTGGCAGCGCGCCCACCGGCTAGGCATCGACACGCCCAAGAAGGACGGGCCCACCAAGTCGTGGAGCGACGAGAGCCTGAACAACGCCCTCGACGCCCTGCGTACCGGGACCATCTCGGCGAACAAGGCCTCCAAAGCCTTTGGCATACCCTCGAGCACCCTCTACAAGATAGCGAGGCGGGAGGGCATCCGGCTCGCGGCTCCCTTCAACGCGAGCCCGACCACCTGGTCGCCGGCCGACCTGGACCGAGCCCTAGAGGCCATCCGCTCCGGCCAGACCTCCGTTCAGAGGGCCTCCACCGAGTTCGGCATCCCCACGGGGACCCTCTACGGCCGCTGCAAGCGCGAGGGCATCGAACTCAGCAGGAGCAACCCCACGCCCTGGAGCGAGGACGCCATGACCGAGGCGCTCGAGGCTGTCAGGCTGGGACACATGAGCATAAATCAGGCGGCGATCCACTACAACCTGCCCTACTCCTCGCTCTACGGCCGATTCAAGCGCGGCAAGTACGAGGAGCCGGTAGTCAACGAGATGTCGCAGGACGGCTCCTCGCAGCACTACCACCAGAGCCCGACGCCCAACCACACCTCCTCGCTGCCCGATCAAATGCCCTACCAGGGCAGCTGA
- Protein Sequence
- MGREPGAQENRRSLGHRPPPSTGSHLPPPPMYPARAPDKWHVAAVDSRAAGKGTRSTGLRGRGPAEEVGGRGRGRKPGWPRKRPLAPGHPLAAPAGASATGERTGRGKAGANRKPGGSFNLGPPRGGGHEPPGLVGPTNSASLFCPQSLLKTADQLKIKGLCEVPESREGPSVSLTSPPRDSSTPRLNYAKLKRHHPRYKRPRYEGGAAPAPAPAPAPAPAPAQAPAARGSLQPAPSAHYHYLHQQAHHRRRSPEPRYKEDDFVESYVRDCNKENRRDCWPAEDDECAEAAPRAAPLAPDACPRAATGPPGGAPDSSSSPSADSHAAAAATNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTADIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSASHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHYHQSPTPNHTSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -