Sagr007800.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- retn_1
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000008.1:4231556-4270293[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.5e-26 1.2e-22 80.5 0.0 2 89 59 144 58 144 0.96 2 3 0.61 2.1e+03 -0.4 0.0 33 60 209 239 190 257 0.66 3 3 2.4 8.2e+03 -2.3 0.0 25 39 316 330 293 343 0.60
Sequence Information
- Coding Sequence
- ATGTTCCAAATGGACCCCGCCATCCACGAGAGGATGTTCCAGTCGTCGGACAGCTGGGAGGACGACGGCTTCGCCAAGGGCGCCAGCGCGGCGACCCTCAAGACAACCGGCTCCTTCGGCGACTCGACCATGAACCTCTTGAGCAAGTTGTACGAAATAAACGACGACCCCAAGAGGAAGGAGTTCCTCGACGACCTGTTCAGCTACATGCAGAAGAGAGGCACGCCGATCAACCGACTGCCGATAATGGCCAAGTCGGTCCTCGACCTCTACGAGCTGTACAACCTGGTGATCGCCCGGGGCGGCCTCGTCGACGTCATCAACAAGAAGCTCTGGCAGGAGATCATCAAGGGCCTCCACCTGCCGTCCAGCATAACCTCCGCGGCCTTCACGCTACGCACCCAATACATGAAGTACCTGTACCCGTACGAGTGCGAGAAGAAGCAGCTGTCGACGCCGGCGGAGCTGCAGGCGGCGATCGACGGGAACCGGCGCGAGGGCCGGCGCAGCAACTACGGGGCCTACGGGGCCGGGGGCGGGGGCGGCGGCCCGGTCGAGGGCCTCGTCCACCAGCGGAGCCCCCACACCCCGAGCTCCCTGGCCTCCCTCCACGCGCAGATCTCGCCCCTGAGCCTCGTGACGGCGGTCCAGCAGGCGGCGGCCGCGGGCGGCCAGCACCAGGTCAGCCCCCAGAACCTCGTGAACGGGAGCGCGGCCCACACGCCGCTGCCCCACCACCCGCACCACCCGCAGCATCAGCAGCCGTCCCTCGGCCAGCCCCCCAACGCAGGGATCGCACCGGACTTTGAAGTGCGCATGGCCGAGTACGTGAAGCACCTGCAGCGCGAGATGGGGAGACGCGCCGCGGGCTCGCCCCAGAGCCTGATGAACCACCGGCAGGGCAGCACGTCGCCGCCGGCGCGCTCGCCCTCCCGCGAGGCCGCCCTCATCGAGATGTCGCGGCTCACCCTCTGGAACATGTACAACAACAACCTGCACCCGGGCATCGGGTACCCCCAGGTCGTCTCGCCGCAGCCGAGCTCGCACTCGCCCCAGGCCCAGCCGGCCAGCCCCGAGCCCCAGAAGGAGGCCCTCGACCTGGGGCTCAGGTCCTCGCCGAGCTCCTCCTCCCCGGCCAGGCAGAGCCCACCCTCCTCCGGGGCCAGCATCCCCATCAAGCGCGAGGTCGACCACATCTCCGCGGCCGCGACCTCCAACAAGAGGCTCTGCATGGACGAGGACAGCCCGCCCGAGAGCAGCGTCCCCGCCCTCCCGGGCACACACATCAAGATCTCGAACCGAGGGGACGGCCGCGACAACTCCCTCGTCGTCAGCATGGAGCTCAACGGCGTCATGTACCAGGGCGTCCTCTTCGCGCAGACGGACGGGAGGGCCAGCCTCGCGGCCTCGACCAACAACAACGAGACCAAGGCCTCGACGCGCAACGTCGTCTCGTGA
- Protein Sequence
- MFQMDPAIHERMFQSSDSWEDDGFAKGASAATLKTTGSFGDSTMNLLSKLYEINDDPKRKEFLDDLFSYMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKQLSTPAELQAAIDGNRREGRRSNYGAYGAGGGGGGPVEGLVHQRSPHTPSSLASLHAQISPLSLVTAVQQAAAAGGQHQVSPQNLVNGSAAHTPLPHHPHHPQHQQPSLGQPPNAGIAPDFEVRMAEYVKHLQREMGRRAAGSPQSLMNHRQGSTSPPARSPSREAALIEMSRLTLWNMYNNNLHPGIGYPQVVSPQPSSHSPQAQPASPEPQKEALDLGLRSSPSSSSPARQSPPSSGASIPIKREVDHISAAATSNKRLCMDEDSPPESSVPALPGTHIKISNRGDGRDNSLVVSMELNGVMYQGVLFAQTDGRASLAASTNNNETKASTRNVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00079598;
- 90% Identity
- iTF_00304874;
- 80% Identity
- -