Basic Information

Insect: Sussaba pulchella
Gene Symbol: gtf3a
Assembly: GCA_963971145.1
Location: OZ020169.1:13080651-13085739[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0002 0.019 15.8 0.0 2 23 840 861 839 861 0.97

2 16 0.32 29 5.8 1.2 1 19 867 885 867 886 0.85

3 16 5e-05 0.0047 17.7 1.5 3 23 924 945 923 945 0.98

4 16 0.0085 0.79 10.7 3.6 1 23 952 975 952 975 0.96

5 16 0.00024 0.022 15.6 1.9 1 23 981 1004 981 1005 0.94

6 16 0.54 50 5.0 0.2 2 23 1012 1032 1012 1032 0.94

7 16 4.6e-07 4.3e-05 24.1 2.6 2 23 1038 1059 1037 1059 0.97

8 16 2.5e-06 0.00023 21.8 0.3 1 23 1065 1087 1065 1087 0.99

9 16 0.0052 0.48 11.4 2.8 2 23 1099 1121 1098 1121 0.95

10 16 0.79 74 4.5 2.7 1 23 1127 1150 1127 1150 0.92

11 16 0.0083 0.77 10.7 2.3 2 23 1183 1205 1182 1205 0.95

12 16 0.0039 0.36 11.8 1.0 2 23 1212 1234 1211 1234 0.96

13 16 0.00014 0.013 16.3 1.6 2 23 1242 1263 1241 1263 0.96

14 16 0.0014 0.13 13.1 2.3 1 23 1269 1292 1269 1292 0.96

15 16 0.39 36 5.5 3.2 2 23 1299 1320 1298 1320 0.96

16 16 0.027 2.5 9.1 2.0 1 23 1326 1348 1326 1348 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0002	0.019	15.8	0.0	2	23	840	861	839	861	0.97
2	16	0.32	29	5.8	1.2	1	19	867	885	867	886	0.85
3	16	5e-05	0.0047	17.7	1.5	3	23	924	945	923	945	0.98
4	16	0.0085	0.79	10.7	3.6	1	23	952	975	952	975	0.96
5	16	0.00024	0.022	15.6	1.9	1	23	981	1004	981	1005	0.94
6	16	0.54	50	5.0	0.2	2	23	1012	1032	1012	1032	0.94
7	16	4.6e-07	4.3e-05	24.1	2.6	2	23	1038	1059	1037	1059	0.97
8	16	2.5e-06	0.00023	21.8	0.3	1	23	1065	1087	1065	1087	0.99
9	16	0.0052	0.48	11.4	2.8	2	23	1099	1121	1098	1121	0.95
10	16	0.79	74	4.5	2.7	1	23	1127	1150	1127	1150	0.92
11	16	0.0083	0.77	10.7	2.3	2	23	1183	1205	1182	1205	0.95
12	16	0.0039	0.36	11.8	1.0	2	23	1212	1234	1211	1234	0.96
13	16	0.00014	0.013	16.3	1.6	2	23	1242	1263	1241	1263	0.96
14	16	0.0014	0.13	13.1	2.3	1	23	1269	1292	1269	1292	0.96
15	16	0.39	36	5.5	3.2	2	23	1299	1320	1298	1320	0.96
16	16	0.027	2.5	9.1	2.0	1	23	1326	1348	1326	1348	0.98

Sequence Information

Coding Sequence: atgagcgcAACGGAGGAATCTGCATTATCGCGGACCATCGATTACGATGATTGCGTTTTGCACAAATATTCTGGCAAAAGGAGCACCGCCGGGCGACGGTCGCATGCCGCAACTGGCCAAGGTTCGACCCGAGAGAGCGCAGGGCTTTTGGAGGATACTCGGTCCAGAGAGAGTCGGGGAGAACGTAGGCTGGCGATCGATCGGAGCATCACTCTCAGACCTCGCAATCCGCAAGGATCGACGCTACGCGTGGATCACGATTACAGCGGTTGCCAACAAGACGGCTCCAGGCCGGTCAAGTCATCTTCGCCGCCGCCGCTGTACTTTCCAGAACCTACGAAGCCGACGTGTTCGAACCAAGCAACGATTGCCAGCCAAAAGAACGTCAATAGATCGAAGAAACCAACGACAGTTGCAAAATTATCATCCCCCGAGGTGGTCGATTCGTCGTCGAGCGTCGACAAAGAGCGCAACGACTCTACGCCTCAGCCGAAAAACTACTGTCGCACTTGCGCCGGCCTGAAAGTACCTCTCGTCGACATATTCGGCAAAAAAGGTATACAAATGAGGCTGAATCAACAGATGAAACATTTGGAAGAGATCGGCCAACAGGACGGTTTGTCCACCCAAATGTGCATGGATTGCATCTGCGATTTGAAAATgagttacaaatttttcatgCAGATAAAAAAAGCTCAGGTTAAATTGCGGTCGATGACGTTGCAATCGACCAGCGGACCGTTTATCGGTCTGACAAAAAAGTGTGAAATCGAACAAACCGTAATTGCGCCAAGCCCAATAAAGCCAGTGGTCGAAGAGGAGCGAGTGGAAGAGATGGAATTTGAAGAGATGCGAATCGAAGAGCCTCGATTCGATGACGTGCGTATCGAAGAGCCTCGATTCGAAGAGGTGCGAATCGAAGAGCCGCAAATCGAAGAACCGGCAATCGAAGAACCGCCTTTCGAAAAACCGCTCGAGGTTCGCGTGAAAAAAGAACCGGAAACGGAATTCACGTTTCAATTGAGCGACGAcgaatcgatcgaagaattcgaTCCCGAAGATCCGCCTTATAGGCCCGAAAATTCGGATTTCGGTGAATCCGAAAGCGTAAGCGAATACGTTGACAAAAGTGCGACGACCAAAGACGATGACGCGATTCCAGAATTACCCGGTGACAACGAAGTTTCGGAAATTCTTCCGACAACTGGTCGTCCGTCGACAGATGGGTCAATCGTTCCCCCGAATATTCCGAGCGATGATCAACGCGATCGAGATTTTAACAAAACCGTGTATCAATACAACACGGATCTAAAAGCTTACGTCAAAGTCGAACCTTTGCGAACATCGCCGACGTTGGAACACGATGAgacgaacaacgaaaaaaacgatgaaaaaaacaatacccaaaaaaatgaaaaaataattaatgacaaACCCGAcgataaaatcgatgaaacacGAGAAGTCAAAAGCGAACCCACATTCTTATCTTTCCCGATAAAATCGGAAATTACCGAGTCTTCGAGCAATCCCGGTTCGAACAATCAACCGAACATTCTAAAACGTAAAATTTCATTGAGAAAAGATTTATTGGTAAACACCGGAACAACCCCGAGAGGTTTGAAACTTCGAAGAATGAACAAACCCAAATTGGACGTGGAAAATGCGGTAAACGTTggcaaagaaaacgaagacggTATAATGTACGTAACGGTGAAAGGAACTAAACCGAACGAATTGCTTCTcgtaaaagttaaaaaaatggaaaaaaccgTTGACGTAAAAACTGATCCGACAAAATTAACGGATAAAATATCAACGACGGAAAAAGATAGTACGACGAAACGAGCGGAAGAACTCGATCTCAGAGAGCGAATAATCGCCGATCAGATCGaagagtacaaaaaaaaacgagaacaaaTTTTGGGTGGTCGAGCGGGACCGgcgattttttccaaaacggAAGACGAAACGGGTGTGCGTTTCGTCGTTCcgaacgaaaattcaaaaccaaacACGAGCGAAATTCCTAAAACGATTCCGGAAGTTCGCAAAGTCGACGAAGCGATTCGACCCTCAATTCCGAACGTTTCACCGTCAACgggagaaaaaagttttttcaccCTCGTATCAAAcgtaaacaaaagaaaaaaatgtaaaatcggtAAATCCGGATTTTTTTACAACAGCACGGGCGAATATCTCTCGCGTTTGGCCAAACTAAAACGCAAATGGGaagaagcgaagaaaaaaaaagaatccttGCGTCGTGAATTGGCCGAATCTCACAACGACGGTAACGCGAAAAAACTCGGTCGTATACTgggtgagaagaaaaaaaatattttggaatttcaaGAATATTTGAAAGAACGTAAAATCGTGATAACACGAATGAAAGACGAAGAAATAATATCGCTGTACGAGGATCGTAACAacgatgaggaaaaaaaaaaattgcccgaTCTCATTGATTCCGAAACACCGGCGGATTACATAGAATCGGAAAATTATCTCGAATGCGATTATTGTCCGGAATCATTCGCCATTCGCGATCAACTCGAGGAACATTTGAAAATTCACGATTACAAATTGTCGTATTACTGCGAGGATTGTCACGAAGAATTTTCGAGCGTAAAAGGCAAACGTAATCACAACGGTaattgtatgaaaaaattgatatgcCGTTATTGCGACGTTTTGTTGGATTCGAAGGGTAAAAAACGTCAACACGAGCAAAAACACATTGATTCGCTTTACGGACAATTGTGCGACGTTTGCggcgaaaaattcaaacatcaaGGTACGTTGGATCAACACATGAAGACCCAACACATGACGTGGGAAAAAGTTCATCAATGCCCGAAATGTCCGAAAAAATTTgctttcaaacaaaaattaacgttTCACCTTAAATCCGTGCACACGAACATGCGGGCTTATCTTTGCGAGGATTGCGGTGCGGATTTTAAAAATCCGGCGAGTTTGCGACATCATCGAATACGCAAACATCATCCGACCGGAAACAAACGTGAATGTCCGGTTTGCAACAAACTCGTGCCTTTTTACAGTTTATCGAAACACATGTACACCCACAAAGCTTATACCATTCAATGTCCCCATTGCgacaaaatgtttaaaaacacATCGACCCTCAAACAACATTTGCGAATTCACGAGGATCAACGACAATACAGATGCGACACTTGCGGCGTTGGTTTCAATCGACGTGACGGTTTGAAATTACACATGCGAGTTCATCAAAAAACCGACAGTCGTTCGTTGAAAGAATGTTCTTGTCAAATTTGTTccgaaaaatttcccaatcaTTCTATGCTCGTTATACATCGAAATCGCGTGCACAAAGACGGTCGACAATTCACATGTCACATATGCAACAGATCCATGTTATCGACGAGATCGTTGGAATGGCACATGTCGCACATTCACAATTCCGCTTTACCCGATCGCGAAGGCGGTGCTACGGCCAATGCCGACGAAATCGATGCCGATGGCAAACCCATCGGTGCGGAAAAAAAACGCGTGTCTTGTCTGCATTGcgacaaaacttttaaaaCCGAAATGATACTCAGAACACACATTAAAAATACCCACGTTGAAAAAGATCCGACGAAGTGTTTGGATTGCGAATTAACGTTCACTTCCGACGTTAGATTGCGTCATCACATGATGGTTGCCCATAACAGATTGGAAGGAACATTGCCGTGTCCCCATTGTTCCAAACGTTTCGTCAATCAATTGCGTCTCAAGACTCACATGATTTCGCATTCCGAGGATCGTCCTTACACCTGTGAAATTTGCGGTTTTAATCTCAAAACGAAGATACAATTGATAAAACATCATCAAAATCGTCACAGCGACGAAAGACCGTTGCAATGCCGTTATTGCCCGTGGAGATGCAAACAAGTGAGCGCATTGGTTTGTCACGAGAGAACTCACACCAACGAAAGACCTTATTCTTGCGTCGTTTGCCGTCAAAGATTCAAATATCTCGGTGACAAGAACAAACACGAGAGACGTCACGAGAGTTTGGGCGGTTCGGGATTCAAAAGAATCGTTGCGggtagaaatttgaaacaaccGAAATCTTCGCGCAATTGTCATCGCGAAGACGAATCCACGTCCGATCAGGACAATGTTGATTACGATGTTCAGGAAGATGAGGAACAATTGAACGAGATTGAACATAAGTACGAGGATGAGAGACATTACGTTAAACTCGAAGAATCCGAAGACGTTGGACAACATTACGAACAATCTTATCAACAGGAATACGAAGAAACATCGAGAGAAACCTCCGAAGCTGCGGAAGTTATAATGAACATGGAAGACACGACGGTGTACACCGAGGAAGTAACCGCGGACAATGTCGAAAACGCGGAAATAATAACCGACGAAATAATGACCAATGAGATATTACAAACCGGCACGGTCGTGCATTTGCAGCAACAAGACGATACGGGTAAAATACAAGTCATACCCGTTATGCTTTCATTGCCGGATCTCAGCGGTGATTCGAGCGCGGAAGTCAATCTGGCCACTGCTTCGATCATGTACAATAACTGA
Protein Sequence: MSATEESALSRTIDYDDCVLHKYSGKRSTAGRRSHAATGQGSTRESAGLLEDTRSRESRGERRLAIDRSITLRPRNPQGSTLRVDHDYSGCQQDGSRPVKSSSPPPLYFPEPTKPTCSNQATIASQKNVNRSKKPTTVAKLSSPEVVDSSSSVDKERNDSTPQPKNYCRTCAGLKVPLVDIFGKKGIQMRLNQQMKHLEEIGQQDGLSTQMCMDCICDLKMSYKFFMQIKKAQVKLRSMTLQSTSGPFIGLTKKCEIEQTVIAPSPIKPVVEEERVEEMEFEEMRIEEPRFDDVRIEEPRFEEVRIEEPQIEEPAIEEPPFEKPLEVRVKKEPETEFTFQLSDDESIEEFDPEDPPYRPENSDFGESESVSEYVDKSATTKDDDAIPELPGDNEVSEILPTTGRPSTDGSIVPPNIPSDDQRDRDFNKTVYQYNTDLKAYVKVEPLRTSPTLEHDETNNEKNDEKNNTQKNEKIINDKPDDKIDETREVKSEPTFLSFPIKSEITESSSNPGSNNQPNILKRKISLRKDLLVNTGTTPRGLKLRRMNKPKLDVENAVNVGKENEDGIMYVTVKGTKPNELLLVKVKKMEKTVDVKTDPTKLTDKISTTEKDSTTKRAEELDLRERIIADQIEEYKKKREQILGGRAGPAIFSKTEDETGVRFVVPNENSKPNTSEIPKTIPEVRKVDEAIRPSIPNVSPSTGEKSFFTLVSNVNKRKKCKIGKSGFFYNSTGEYLSRLAKLKRKWEEAKKKKESLRRELAESHNDGNAKKLGRILGEKKKNILEFQEYLKERKIVITRMKDEEIISLYEDRNNDEEKKKLPDLIDSETPADYIESENYLECDYCPESFAIRDQLEEHLKIHDYKLSYYCEDCHEEFSSVKGKRNHNGNCMKKLICRYCDVLLDSKGKKRQHEQKHIDSLYGQLCDVCGEKFKHQGTLDQHMKTQHMTWEKVHQCPKCPKKFAFKQKLTFHLKSVHTNMRAYLCEDCGADFKNPASLRHHRIRKHHPTGNKRECPVCNKLVPFYSLSKHMYTHKAYTIQCPHCDKMFKNTSTLKQHLRIHEDQRQYRCDTCGVGFNRRDGLKLHMRVHQKTDSRSLKECSCQICSEKFPNHSMLVIHRNRVHKDGRQFTCHICNRSMLSTRSLEWHMSHIHNSALPDREGGATANADEIDADGKPIGAEKKRVSCLHCDKTFKTEMILRTHIKNTHVEKDPTKCLDCELTFTSDVRLRHHMMVAHNRLEGTLPCPHCSKRFVNQLRLKTHMISHSEDRPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCVVCRQRFKYLGDKNKHERRHESLGGSGFKRIVAGRNLKQPKSSRNCHREDESTSDQDNVDYDVQEDEEQLNEIEHKYEDERHYVKLEESEDVGQHYEQSYQQEYEETSRETSEAAEVIMNMEDTTVYTEEVTADNVENAEIITDEIMTNEILQTGTVVHLQQQDDTGKIQVIPVMLSLPDLSGDSSAEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -