Spul014259.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sussaba pulchella
Gene Symbol
-
Assembly
GCA_963971145.1
Location
OZ020170.1:16805428-16808780[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.013 1.2 10.1 2.9 2 21 500 519 499 520 0.93
2 12 6.7e-05 0.0062 17.3 4.8 1 23 547 570 547 570 0.97
3 12 0.0007 0.065 14.1 0.8 1 23 583 606 583 606 0.93
4 12 0.00051 0.048 14.5 1.1 1 23 632 655 632 655 0.97
5 12 0.004 0.37 11.7 3.5 1 23 661 683 661 683 0.98
6 12 0.0091 0.84 10.6 2.4 1 23 698 720 698 720 0.94
7 12 4.2e-05 0.0039 18.0 0.4 1 23 763 785 763 785 0.98
8 12 4.6e-07 4.2e-05 24.1 0.2 1 23 791 813 791 813 0.99
9 12 0.011 1 10.3 1.6 1 23 819 841 819 841 0.94
10 12 0.0032 0.3 12.0 4.2 1 23 847 869 847 869 0.99
11 12 1.2e-06 0.00011 22.8 0.9 1 23 875 897 875 897 0.99
12 12 2e-05 0.0019 19.0 1.2 1 23 903 926 903 926 0.96

Sequence Information

Coding Sequence
atgctGACTCTGATACTGCAAAATCACGAGGGACAGAAAGTCGAATTGAGCTTTCAACCGGAAGATACATTTGCGGATTTGAGAAATCAATATCCTTACAACAATGGACTGTCAGATTCTCTCAAGCAACTTATCACCAATGGAACTAGCGTGCcggaacaaacaaaaatatttgactGGGTCACTGGTGGCGCTCGCGAATGGTTCAGCGCAGATCACGTTGAAAACGCAGATGACGATTGTAGCGAGTCTGTGACGGGAGAGACACAAACAAAAGAACGTTGTGCGCAAGCAGGCCTGGATTCGGACTTAACATCACCTTGTAAACCTTCACCTGTGGAGCACGGAAGGCTTGCAATATGTTCGGCAGATTCCGACAGGCCAGAATTCTATGACGAAATCCTCGAATCGGGTGTGGAAAATTGCCAAAAGTATTTTTTGTGCGACAGTCCCTTCGGTGAAGAAAGATTTTCTTCGCACCCTCCAGTCTACGCCGGCGAACAGTCAGCGGTTTCGCTTCTCAAACCCAAAAATCAGAGAATGTGGACGGATGTGAAAGTGAACGAGACATTGAACGAaggcaaagaaaataatgagcTTCGCGACGTTGACTCCAGCAGTGAGCTTTCTGCGCTCAAGATATTCGACACAGTCGAGGATTCCGAGCATCCGGGAATTCTTTGCCGATTGTGCGGTGAACCAACCGCCAATCCTATTCACCTTTACGCTATGACGGAAGATATCGAGAATTCCAGCCTTGCcgatacaattaatttttgtcttCCGATCACGGTGTCCGTCATGGATCCATTGCCAAAGCAAATTTGCGAAGAGTGCCAAACAAAGTTAAATACATGTCACGAACTGGCGTTGTCATCTTTGCGGACGGAAGAGAAACTCAGTCGTCTTCTGCGAGAGAAGAAATTGTGCGTTGACGACGATAAGAAACAACATTGCCCGCTGTGTCTCGAAGGCCTGATAAGAACGGTCAAAAAGAGCGGTATTTATCGCAAAGACGACTTGAAAAACGGATTATATTGCTCAGCAAACGCGAAAGAAACCGCAAGGACGAATTCCACCGAAAGAATCGTTCCGACCGAAGAAAGCAACGTCTTATCGGCGAGTCGAATGACTTTCCCTCCGTTGACCGACTCCGTTACACAAACGACCGcgattttgttaaaaattaagGACACTAACGAAAATCCGTCGTCTTTGTTGACGGAGGAAGAATTTTCGGTTTCCAACTGCTCGGCAAAATTCAACGCCTCATCGATCCCAACTCACGAATGTACTTCGGAAAATCAAGATACTCCCTGCAATTCCTCGACCAATGAAACTCTAAACTTTGCAATTACTCGAGAGCTAGAGGCGAATGGCAATCGCCCGGATCTTCGCGAGGGTGAATTAATCTGCAATTCGTGTCGCTTCGAATGCAACGCACTCGACGAAGCGACTGAACACGCCAAAATCTGCAGAACCGAATCATGGATGATTCGTTGCGGgacttgtgaaaaatttttttccaccaaaGACGAGATGAACGATCATCGTTGTCACGAAATCCCGTTGGATTTCCACCAGCCTGACGAGCGCATCGACGCAATTCCCACAAAACGACGAAAACAATCCACTCGATACAATTGTTTCTTCTGTCAAAAACCATTCACGCGAAAAGAAAGTCTCAAAACTCACATATTAACTTGTCACACCGAAGATGTGGAAAATTCATCATCTTTAAAATGTTACAAATGCAAAATTTGCAACGAAGCATTCGTTCGCGAATCCGATGCCGAGGTTCACACGAGCCATCGTCACGTCGAAACTTTCGCGGCTTCGGATTTTCACGTTAGCCAAGAATTCACGCCGGAAGAAATCTCGATATCGCGTTTGTACGTTTGCGAATATTGTCAACGTTTGTTCACGTTACCAAGCTCGTTGCACGAACATCGGGAAACGGAACACAACGAAAATCCCGAATATTCGTGCAAATCGTGCGATAATTCGTTCGATTCGCACAAATTGTTGACGAATCACAAAAATGTACATTGTCATCGCGAATCATCGAACGCTCTCGGCGTTAAACAATTTTACGTTTGTAAATATTGCGACAAAATGTTTTTGCATTATTCCAGTCTATCCGGTCACGTGACGCAGCATCGTGAGATCGTTCCTTATCTTTGCCGGCCGTGCAACGCAAATTTCGCGACTTATCGAGAAATCGCGGTTCATCGTGACATCGTTCATCCTTATCAATCGACGGTTAACGAGAGATCGAAAAGGTGTTACAATTGTCAATACTGtgaaaaacaatttagttACGAAGTTGCTCTAGTCAAACACGTGAGAATACACACGGGTGAAAGGCCGTACAAATGTTCGGTATGCGGCAAAGGATTTGCCCAGAGTTCGGGTCTGAACACTCATGTGAAAATTCATTCCGACGCAAGACCCTATTCTTGCCCGGAATGTCCGCGTACGTTTAAAATCAAAGGCGATTGTGATAATCACGTTAAAAGACATTCCGGCGATCGGCCGTACAAGTGCGAATTTTGTTCGAAAGCTTTCATGACCCAACACGTTTTCAGTCAGCATCGTAGAATTCACACGAACGACAGACCTTACAAATGCGACATTTGCGGCGAAGCTTTTCGACGATCCCACGTCCTTACCGTTCATCGAAGGATTCACACGGGTGAAAAACCGCACGTTTGCGATCTTTGCCCGAAATCGTATCGTCAACGCGGTGATCTCGTGAAACATCGAAAGGTTCAGCATGGTATTAATTCGACTACCATCGCTAAACACACTTTTACCGAAAATTCTTGTGAAAACTCTGGCGATTGTTTTGCCAAGCCTGGAGATCGCCGTGTAAATTCTTCGCTGCTTTTGCCGCTTTGA
Protein Sequence
MLTLILQNHEGQKVELSFQPEDTFADLRNQYPYNNGLSDSLKQLITNGTSVPEQTKIFDWVTGGAREWFSADHVENADDDCSESVTGETQTKERCAQAGLDSDLTSPCKPSPVEHGRLAICSADSDRPEFYDEILESGVENCQKYFLCDSPFGEERFSSHPPVYAGEQSAVSLLKPKNQRMWTDVKVNETLNEGKENNELRDVDSSSELSALKIFDTVEDSEHPGILCRLCGEPTANPIHLYAMTEDIENSSLADTINFCLPITVSVMDPLPKQICEECQTKLNTCHELALSSLRTEEKLSRLLREKKLCVDDDKKQHCPLCLEGLIRTVKKSGIYRKDDLKNGLYCSANAKETARTNSTERIVPTEESNVLSASRMTFPPLTDSVTQTTAILLKIKDTNENPSSLLTEEEFSVSNCSAKFNASSIPTHECTSENQDTPCNSSTNETLNFAITRELEANGNRPDLREGELICNSCRFECNALDEATEHAKICRTESWMIRCGTCEKFFSTKDEMNDHRCHEIPLDFHQPDERIDAIPTKRRKQSTRYNCFFCQKPFTRKESLKTHILTCHTEDVENSSSLKCYKCKICNEAFVRESDAEVHTSHRHVETFAASDFHVSQEFTPEEISISRLYVCEYCQRLFTLPSSLHEHRETEHNENPEYSCKSCDNSFDSHKLLTNHKNVHCHRESSNALGVKQFYVCKYCDKMFLHYSSLSGHVTQHREIVPYLCRPCNANFATYREIAVHRDIVHPYQSTVNERSKRCYNCQYCEKQFSYEVALVKHVRIHTGERPYKCSVCGKGFAQSSGLNTHVKIHSDARPYSCPECPRTFKIKGDCDNHVKRHSGDRPYKCEFCSKAFMTQHVFSQHRRIHTNDRPYKCDICGEAFRRSHVLTVHRRIHTGEKPHVCDLCPKSYRQRGDLVKHRKVQHGINSTTIAKHTFTENSCENSGDCFAKPGDRRVNSSLLLPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-