Spul016515.1
Basic Information
- Insect
- Sussaba pulchella
- Gene Symbol
- -
- Assembly
- GCA_963971145.1
- Location
- OZ020172.1:14136041-14139075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.05 4.7 8.3 0.2 3 21 8 27 6 28 0.85 2 14 6.7 6.2e+02 1.6 0.0 2 20 34 52 33 54 0.91 3 14 0.64 60 4.8 0.1 1 12 213 224 213 227 0.91 4 14 3.9 3.6e+02 2.3 1.0 1 20 380 399 380 401 0.91 5 14 0.00013 0.012 16.4 0.1 2 23 406 427 405 427 0.97 6 14 0.0005 0.046 14.6 0.7 1 23 440 462 440 462 0.98 7 14 0.028 2.6 9.1 1.5 1 23 480 501 480 501 0.86 8 14 0.00072 0.067 14.1 0.2 2 23 507 528 507 528 0.95 9 14 0.00042 0.039 14.8 4.4 1 23 594 616 594 616 0.98 10 14 2.4e-06 0.00023 21.8 3.7 1 23 622 644 622 644 0.96 11 14 0.00028 0.026 15.4 4.1 1 23 650 672 650 672 0.97 12 14 1.7e-06 0.00016 22.3 0.8 1 23 678 700 678 700 0.98 13 14 0.00011 0.01 16.7 0.2 1 23 704 726 704 726 0.99 14 14 0.00023 0.022 15.6 0.1 1 23 734 756 734 756 0.98
Sequence Information
- Coding Sequence
- ATGGGTTCTCTGAGCCTGGTCTGCCCTATGTGCTGCGGCGAAACTTTCGACGATTCGCAATCTTTGAAGTATCATTTGTTGAGCATGACCGACAATCTTTATTGCCCAAATTGTGCGGATCGTTTTGATTCCGTAGCTGCATTGATTCAGCATCTCGATAACTGTGGACGAAGCCATGAAAATCCCGACGACGCCCACAAATCCGGAAATAACGGGAGTGAGAACATAGTTTCGTTGAGCCGTACAGACGCTTCCGATTGTGGATTTTTGGCCACTGTTGATGACGACGGAAATGTCGTATTGGCAGATTCTCCAACCGTACAAAACAAAGAGAGAGCAGCCGAGGCCGGGGCGAATACGCGAACAGTCGAGACTTTTGGATATGGGGATGAGGAAAAAACTGGAGTGTTTGGTGTGAAAAATTTTAGTTTGACGGAGAatggaaatgagaaaaagGTTGTTGAAATAAAGGATGAGCAAATGGATAAATCAGGTGAGGTTGCGGTTGCGGAAGACGCTTCGGATGTGATAATGGATGGGGAAAGATTGGAAGATCAGTCCGAGGCGGTTGGAGTGGAGAACGAAGGTCTTTGTCGTGCAAAACGAGAAATATGCCAGGAAGAATCGGAGGCACTTTACAGTTGTAGCAGTTGCGGCATGAGTTTCAACAGCGTATTGGAACACATAAAAGATTATCACGACGGTCAAGAAGTTGTCCTGGAAATGGCGGAGCAACAGATGGAACAACTACCGAACGAAGTTGAATCGTCTTCCGTCGGTCGTGTGACGAGCGAGGAGCGTTCGTCGGGGTGCGATATCGATGTACGACGTTCCGTCGACTCGGTTACGTCGGTTATCCCAGCCCGGCATCGTCAAACAATGAATACTCTTCGAACGGAAGAATGCGTGGACAGCGAGGGACGTTTGTACACAAGAAAAGTCGTTCAAATCGAGCGATTTTGGGATCGTTCCTCGGTCGGCGTATCGCAGTTTCAATTGCAACAACATCAGCAACCCGTTAAATCCGGTCcgatgattgaaaaatttttttccaacgtcgAAGGCGTTAAAGTTACCGGTAAAAGTTCGGGTTCGAATCGTATCGTCGTTGATTCAACGagcacgcaaaaaaaaatgtacagatGCTACAAGTGTCTCGAAGAATTTGGTAAAATGGTGGAATTTCGGGTTCACGCTTGTTCCGATGGTAATAATCAATGCGATATCTGTGATGAAACATTCGCGAGCGTAAAAGCTTTGCAATCGCACTCCCGAATTCACGAAGGCGATATTGAAGTCGGAGATTTGAACAAACAGTATATTTGTCCGATTTGCGCGACTGAATTTGCGTCACACAAAAGTCTGAGATTGCATTCGAGAATGCACGCGCCTGTAAGGGCAAGACACGTCGACGCACCCCTGGGAACTCACGGGGAATTCACTTGCCACGAGTgtgGTAAAACACTTTCGGAATCGTACAGAAAAGCTCACACGGCACTTCACAAAGGCGAATCGGCAACCTGTTCCGTTTGCAATCGTAAATTCGATTCGCCGGATAGTCTGGCGATGCATGCTACCGTCCACATAGATCACATCGAACACTCGCAACAATCCCAACAAGAAGTACAACAAGATAGATTTAACGATAAATCCCAGCCGCATGTTGATAATCAAGGACCGGTTAAATCTACCCAATCGTCCATAGAAGATGTATCGACGATGTCCTCTATCCTTACATCCGAtgttatcgaagaaaaattaaaagagtcGCAAAAACCTTATCAGTGTCAGCACTGCGGTCGAAGATTCATGAGACCTCACGAAAAAGTTAAACACGAGAGGATACACACCGGAGAAAAACCTCACGCTTGCGAGGTTTGCGGAAAAACATTTCGAGTATCTTATTGTCTTACTCTTCACATGAGAACGCATACGGGAGTGCGTCCTTACGCTTGTCAGCATTGCGGCAAAAGATTCAAAGCCTCGTCGGTTTACAATCATCATTTGTTGACGCACGGTGATAAACGTGCGTACACGTGTCCTTATTGCCCGAAAACTTTCAAAACCCGGGTTCAATTGGCAGGACACAAAAACAGCCACACGAAACCTTTTCGTTGCACCGAATGTTCACGTCCGTTCGCGTCTTTGTACGCGGCGAGGGCCCACATCCAGACTCACAAAAAagacaataattttaaattcagCTGTTACATATGCGGAGCGTCTTACGGACGTGCATTTGCCCTGAAGGATCATTTAAAAGTTCACGCTGCGGAAGACGTTATTGCCCCACCGGAACCGGCTCGTGTCGAAGAACTTCCAGAGCCCGAGGATTATCTCATTAGCCACGAGATTGAACAATTTGACCAAATTAATCAAACCGaagacgataataaaaaactcGTATCCGCGGCTGCTGACGCGACAACACCAACGTCATCGGTTATTCTTTATCAGCCAAACGAATAA
- Protein Sequence
- MGSLSLVCPMCCGETFDDSQSLKYHLLSMTDNLYCPNCADRFDSVAALIQHLDNCGRSHENPDDAHKSGNNGSENIVSLSRTDASDCGFLATVDDDGNVVLADSPTVQNKERAAEAGANTRTVETFGYGDEEKTGVFGVKNFSLTENGNEKKVVEIKDEQMDKSGEVAVAEDASDVIMDGERLEDQSEAVGVENEGLCRAKREICQEESEALYSCSSCGMSFNSVLEHIKDYHDGQEVVLEMAEQQMEQLPNEVESSSVGRVTSEERSSGCDIDVRRSVDSVTSVIPARHRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRSSVGVSQFQLQQHQQPVKSGPMIEKFFSNVEGVKVTGKSSGSNRIVVDSTSTQKKMYRCYKCLEEFGKMVEFRVHACSDGNNQCDICDETFASVKALQSHSRIHEGDIEVGDLNKQYICPICATEFASHKSLRLHSRMHAPVRARHVDAPLGTHGEFTCHECGKTLSESYRKAHTALHKGESATCSVCNRKFDSPDSLAMHATVHIDHIEHSQQSQQEVQQDRFNDKSQPHVDNQGPVKSTQSSIEDVSTMSSILTSDVIEEKLKESQKPYQCQHCGRRFMRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDKRAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNFKFSCYICGASYGRAFALKDHLKVHAAEDVIAPPEPARVEELPEPEDYLISHEIEQFDQINQTEDDNKKLVSAAADATTPTSSVILYQPNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -