Spul011686.1
Basic Information
- Insect
- Sussaba pulchella
- Gene Symbol
- -
- Assembly
- GCA_963971145.1
- Location
- OZ020168.1:18074362-18076977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4e-05 0.0013 19.5 1.8 1 23 354 376 354 376 0.98 2 15 0.018 1.6 9.7 4.4 1 23 382 405 382 405 0.96 3 15 1.4e-05 0.0013 19.4 1.4 2 23 498 519 497 519 0.97 4 15 2.4e-06 0.00022 21.9 1.2 1 23 525 547 525 547 0.98 5 15 0.0035 0.32 11.9 0.2 1 23 553 575 553 575 0.97 6 15 5.5e-07 5.1e-05 23.9 1.1 1 23 590 612 590 612 0.98 7 15 8.6e-06 0.0008 20.1 1.2 3 23 620 640 618 640 0.98 8 15 2.2e-05 0.002 18.9 2.8 1 23 646 668 646 668 0.98 9 15 0.00093 0.086 13.7 0.2 1 23 674 696 674 696 0.99 10 15 4e-05 0.0037 18.0 0.1 1 23 702 725 702 725 0.92 11 15 2.1e-05 0.002 18.9 1.3 1 23 731 753 731 753 0.98 12 15 0.00013 0.012 16.4 4.7 1 23 759 781 759 781 0.98 13 15 2.7e-05 0.0025 18.6 0.7 1 23 787 810 787 810 0.96 14 15 5.6e-06 0.00052 20.7 0.9 1 23 816 838 816 838 0.97 15 15 4e-06 0.00037 21.2 5.1 1 23 844 866 844 866 0.99
Sequence Information
- Coding Sequence
- ATGGATACAGTTACGACGATTAATAAGGAATGGATTTCATCAAAGGGTTTGCTCAATCGCGAGCTACCTTTGATGCTGAATGCGCCTTTTGCGTCGGTCAAAAAGGAGAATTACTTGAGCGGTGGATCCAGGAATCGGGAAATGCAGAAAAACGTcagagagaaggaaaaaatcgagatttCCAGTAGCATTAACGATTCCATGGAAAGCAAAACTGAAACGACAATTAAGGGACCTTCCGGTGGAGTATCACCCATAAGAATAAATCACCGAGCTCAGATAGATGTCGTTGACATAGAGGACAAAGAATCTACCATCTACAAGCATCTTTTAATTTACGAAGAGCAATATTCCAAGTTCGTTGTCCTCAGGGCACTGAAAAGCAAAGAAGCTGGAGAAGTTGCGGTCGAGCTTGCAGAAATCGTGACAACAATCGGAGCACCGCGAATAATTCAGAGCGGAAACGGTCGCGTCTATGCCGAGCAAGTGGTGCGAGAGATTCGCCTCTTGCTCAGAGATTTCTGTGTTGTTCACGGCGATGCCGCCAAGAACGGAGATGAACGACGCGATTTTCGCAAATTGCTGGAATCGTGGGTGATCAAAAATCCGGGAAAACAATGGCAGGACGGTCTGAAGATTATTCAGGTTTTGGAAAATACAACGGCGAATTCgcgattcggaaaaattccgagtcaattatttttcggtgGAAATCTTACCGAAGATTTGCGACGAACCATAGGTGGAAAACGCACGATGGGAAATATTGGCACCGAAGCCGTTTCGGCTTTGAGAAATCTGAGGGAGCGTAAGTCGCTCACTAACGATTATAATCAAATTGACCCCACGCTGGCTCGTCCTGAGGCCATTGAGAATGAGCCCGAGGTTAGCGACAATGGCTCTCATGATATAAATCACAAAAATCATTCCGTCAAAATCAAAACGAATGCAAAAACTCAAAATACCATAAACACCGACAGTGAATCATCTGTGGCTATGGAAAATTCAGTGACCATCAATTCGCACGAAGAAAAGGACCACGATAACGAAAAGAACAATTTCCCATGCGAAGTTTGTCAGAAGCAGTATGTAAAACTCGGTCATCTGAGAAATCACATGAAGACGCACACAAGAATTGGAAAATTCGAGTGCACGATTTGTTGCAAATCATTTCGTCTCTCGAGTCTCTACGACAAACACATGCAGAACTTTCACAAagatcaggaaaaaaatgagagttCGAGAACTTGCGGTCGCCTCGAAGATCCAAAGAATGACGATGCGAACAGTCCTACGCGTGCGGAAAGCAGTTCTAAAGAAAATCCACGGATAGAAGAGAAATTCACGTATATTCCGCcggaaaattcgaagaaatcgCCCTCTTCGTTGATCTCCATAAGAAATTTAGCAAAGAAAAGATTGCGATCGACCCATCCGACCAGAAGAAAGCTCAACAAGTCCTCAACGAATGTAAACAAAAATCCACGATTGGAATGCACGTATTGCAagcaaaaatttgatttcccAAGCGTTTTAAAGCGCCACATGCGTTCTCACACCAACGAGAGACCGTACGTTTGTCAGGTTTGCGACAAAAGTTTCAAACAGCTCGGACATCTGAGTCAGCACGCCCTCACGCACACGGACTATCGTTCCTTCAACTGCACGATCTGCGCCATTAAATTCGAATCTCTCGACTCTCTCAATCTTCACGCTCAATCGCACAAAGACGGAACTCTCTGCCGTTCGAAAGATTCTTATCGTTTGTTCGAATGCGACACttgcaaaaaagtttttaccaCCAAAAGCGTTTTGGAACGTCACATATCCACTCATACCCACGAACGTCAATTCGGTTGCAATATTTGCGACAAAAGATTCAAGCAAGCCGGTCACGTTAAATCTCACATGCTCGTGCACACGGGCGAACGTAAATTTCAATGTACCTTGTGTTCCAAACGATTCAGTCTCTCGAATTCCCTCAAAAAACACATGTACGTGCACAACGGGGAAAAACCGTATCAGTGCGACGTATGCGGCGCGAGATTTCTCGAGAAACGCAATCTCAACGGTCATCTAATGACGCACACGAACGAACGTCCGTTTGCTTGCAAAATTTGCGGCAAACGTTACACCCTCGCGGACACGTTGCGACGTCACGTGAGCGCGGCTCACGAAGACGGTCGTACTTATCAGTGCGAAATTTGCGCAAAAATGTTCAAGCAACTCGCACATTTGTCGGTTCACAAAAAAGTTCACAACGACGAGAGGCCTTTTCAGTGCCATCTTTgcgacaaaaatttcaaacacaAGAATGTTCTCAAATCGCATTTGGCCATTCACGCCAATGTCAGACCCTTCGAGTGCGACGTTTGCAAAGCGACTTTCGTGAGAAAGACGAATTTGCACACCCACATCGCCTCGGCTCACATGAACGAACGTCCTTACGTTTGTACGATTTGCAACAAACGATTCAAACAAATCAGTCATCTCAACGGGCACATAGTCGTTCACAGCAACTCGATGCCTTATCAGTGCAACTTTTGCGATCGTCGTTGCAACAGACtcgataatttgaaaaaacacatGAGACTGCATTCTAGAAACAAGGAATAG
- Protein Sequence
- MDTVTTINKEWISSKGLLNRELPLMLNAPFASVKKENYLSGGSRNREMQKNVREKEKIEISSSINDSMESKTETTIKGPSGGVSPIRINHRAQIDVVDIEDKESTIYKHLLIYEEQYSKFVVLRALKSKEAGEVAVELAEIVTTIGAPRIIQSGNGRVYAEQVVREIRLLLRDFCVVHGDAAKNGDERRDFRKLLESWVIKNPGKQWQDGLKIIQVLENTTANSRFGKIPSQLFFGGNLTEDLRRTIGGKRTMGNIGTEAVSALRNLRERKSLTNDYNQIDPTLARPEAIENEPEVSDNGSHDINHKNHSVKIKTNAKTQNTINTDSESSVAMENSVTINSHEEKDHDNEKNNFPCEVCQKQYVKLGHLRNHMKTHTRIGKFECTICCKSFRLSSLYDKHMQNFHKDQEKNESSRTCGRLEDPKNDDANSPTRAESSSKENPRIEEKFTYIPPENSKKSPSSLISIRNLAKKRLRSTHPTRRKLNKSSTNVNKNPRLECTYCKQKFDFPSVLKRHMRSHTNERPYVCQVCDKSFKQLGHLSQHALTHTDYRSFNCTICAIKFESLDSLNLHAQSHKDGTLCRSKDSYRLFECDTCKKVFTTKSVLERHISTHTHERQFGCNICDKRFKQAGHVKSHMLVHTGERKFQCTLCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFACKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCDKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLHTHIASAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYQCNFCDRRCNRLDNLKKHMRLHSRNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -