Spul013979.1
Basic Information
- Insect
- Sussaba pulchella
- Gene Symbol
- zfh1
- Assembly
- GCA_963971145.1
- Location
- OZ020170.1:12878801-12882479[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00046 0.043 14.7 0.7 1 23 119 141 119 141 0.93 2 22 2.4e-06 0.00022 21.9 3.3 1 23 147 169 147 169 0.99 3 22 1.8e-07 1.6e-05 25.4 0.1 1 23 175 197 175 197 0.98 4 22 0.0003 0.028 15.3 2.8 2 23 204 226 201 226 0.93 5 22 2.4e-05 0.0022 18.7 6.1 1 23 231 253 231 253 0.97 6 22 6.1e-06 0.00057 20.6 0.6 1 23 262 284 262 284 0.98 7 22 3.6e-06 0.00034 21.3 1.0 1 23 290 312 290 312 0.97 8 22 6.4e-05 0.0059 17.4 1.3 2 23 319 340 318 340 0.97 9 22 6.8e-06 0.00063 20.5 3.3 1 23 346 368 346 368 0.98 10 22 3.6e-06 0.00034 21.3 0.5 1 23 374 396 374 396 0.98 11 22 0.12 11 7.1 0.1 1 21 508 528 508 531 0.84 12 22 1.3e-06 0.00012 22.7 1.8 2 23 538 559 538 559 0.98 13 22 0.00079 0.073 14.0 9.2 1 23 589 611 589 611 0.98 14 22 0.00034 0.031 15.1 4.8 2 23 617 638 616 638 0.97 15 22 0.0015 0.14 13.1 0.1 1 23 643 665 643 665 0.98 16 22 1.7e-06 0.00016 22.3 0.9 1 23 673 695 673 695 0.98 17 22 0.091 8.5 7.5 3.3 1 23 701 724 701 724 0.94 18 22 0.00028 0.026 15.4 0.3 3 23 737 757 735 757 0.96 19 22 8.5e-06 0.00079 20.1 2.8 1 23 763 785 763 785 0.96 20 22 4.1e-08 3.8e-06 27.4 0.2 1 23 791 813 791 813 0.98 21 22 3.2e-07 3e-05 24.6 0.9 1 23 819 841 819 841 0.98 22 22 0.00067 0.062 14.2 0.9 1 21 847 867 847 868 0.96
Sequence Information
- Coding Sequence
- ATGAAACTAATaTCATCGAGTTACGTCGTCGAGATCGCGAGATCGTCAAAATCCGAAATTCCGCAACGTCATCATCTCGTCGATACGAAAATGCAATTCGCGCATCAACGAACCATCGCCCAATCATTGCTCGACGAAGACATTTGCGCCCTTTCTCTCGTCGATTGTCTAAAACCGTTCGACGAAAAGCAACTCcacgaaaatccaaaaaattcgccTCGACACGGACAAACCGTGGAATCCGAAAAGGAAgataacgaagaagaagaagtcgaagaagaagaagaagaagacgaagaagaaaacgaagaagaaaaaaattcgatcgtcgatcgtaaaacaacgaataatttttatcagtgCGAAATTTgttcgaagaattttcgttcgaaaaatcttttcgaagGTCATCGCGTGGCCCACAGCGATTTGCGTCCATATAAGTGCGACATTTGTCACAAATCTTTCAAACGTACCAACACCCTCGCCGTTCATCGACGCATTCACACTCACGAGCGAAATTTCGTTTGCGACGTTTGCGGTCGTGCTTTCGTTCAAGCTTCGCAACTCGCGACTCATCAACGTCGtcatttcgaaaaatacaCGTGTTATTGCGAAATATGCGACAAAGGTTTCTTCACGAATGCCGAATTGCACGGTCACATGAACATGAAACACGAAGCTAAAGAACACGTTTGTCACACGTGCGGTAAATCATTTCCCAACAATCACACTCTCGttcgtcataaaaaaattcacgatccTAATTTCAAACCCGTGAAACATCAGTGCGAGAtttgtggaaaaatttttGCTTACAAAAATTCTTTGGTAGTTCACGTTAAATCTCACACGGGTGAGAACAAGTACGATTGTCATTTGTGCGGTAAATCCGTGTCTTCGAAAGGTTCGTTGCAGGATCATTTGAGACTTCACGGTGGTGAAAAATCTCTCGTTTGCGACGTTTGCGGCAAAGCTTTTCACAAACGAACGACTCTCGTTGTTCACAAGAGAACTCACACGGGTGAAAAACCTTACAATTGCGATACATGCGGAAAATCGTTTACCCAACATTCGACTCTTGTCATACACAAACGTTATCACACCGGTCAGAGGCCTTATCAGTGCAATTTTTGCAACAAATCGTTCGTTTCACGAGCTTTGCTCAACGCTCATGGCAAAGTACATCTCGTTAACGTTGTCAACGTCATCGTTCAGCCGACATACAGCCGAACGCGAAACGACGAAGATTCTCCGACGACGATGTTAACGAAGCTCGATTTGGTCAGAAAAGTCCCCAACGCGGTTGCCACGAGATCGAAGAAATCcccgactacgacgacgacgacgacgaagactcctaaaacgacgaaaacgacgaaaaaaacaacgaccgTTACAACATCGCCGAAGAAAACCGACAAATCTATGCTCGAGACACTTCTCAGCGACGGAAAAACCATCGACGACGAGATAAAACAAGAAAGCGTGGACATAGACGAGGACGATCATCCACTGGCCTATAATTGCAAATTGTGCGGAATATTTTTCGCTTCCGAAGAATTAATGGACGATCACGAGATCGAAAATCACAAGGGTAAGCGTAAAAACACGTGCAATCAGTGCGGACGTGTTTTCCGGACGATCATAAATTTGCGAAAACACATGAAGAAACACGTTGGACGCAAACGTAAAACAACAACTGGCAATTCCGCAGGTCGTACGAATATCgtaaaagagaagaaagaaaaatacgaaactgAATACATGTGCGACacttgtcacaaaatttttcatcacaaGAGCAATTATCAAAAACATCTTCTTCGTCACACAACCGGTGAATTAACGTGCAAACAttgtccaaaaaaatttcgtttgtttcgcGATTTGACGCGTCACGAAAAAACTCATTTTTATCCGAGTTACGTTTGCAAAGAATGCGATTACGAAACAACGGTTTTGGCTGCGTTGAGCATACACATGACGAGACACACCGACAAATCCGATCTTCCGTTCAAATGCAACGATTGCGATAAACGTTTTCGCAAAGCCATCGATCTTCAAGAACATTACAACGTTCATTCGGGCGAAAAACCTTTCGTTTGTCAAAATTGCGGTAGTTCGTTCTATCTGAGACGTCAATTGTCGGCTCATTGTCGACGTTCGCATCCGGAAATCAAAGCCAATAAAATTACGAGCACGGCTTGTGACATTTGCGGACGTGTTTTGGCTACGAAAAGATCATTGTTTCGTCACAAGGAGAGTCACAATCCAACGAAACTTTATCTTTGCGATTTTTGCGGCAAAAGTTTGAGCAGTTCCGAACATTTGAAGAAACATCGAAGAATACACACGGGTGAAAAACCGTACGTTTGCGATATTTGTGGAAAAGGTTTTACGGATTCCGAAAATTTGCGTATGCACAGACGAGTTCATACGGGCGAAAAACCTTACAAATGCGATCAATGTCCGAAAGCTTTTTCTCAACGTTCCACGCTTACGATTCATCGACGTGGACACACGGGGGAGAGACCGTACGTTTGCAAAATTTGCAGTCGAGGATTTTCGTGTCAAGGAAATCTTACGGCTCATCAAAAATCCACCTGCGTTTGA
- Protein Sequence
- MKLISSSYVVEIARSSKSEIPQRHHLVDTKMQFAHQRTIAQSLLDEDICALSLVDCLKPFDEKQLHENPKNSPRHGQTVESEKEDNEEEEVEEEEEEDEEENEEEKNSIVDRKTTNNFYQCEICSKNFRSKNLFEGHRVAHSDLRPYKCDICHKSFKRTNTLAVHRRIHTHERNFVCDVCGRAFVQASQLATHQRRHFEKYTCYCEICDKGFFTNAELHGHMNMKHEAKEHVCHTCGKSFPNNHTLVRHKKIHDPNFKPVKHQCEICGKIFAYKNSLVVHVKSHTGENKYDCHLCGKSVSSKGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGEKPYNCDTCGKSFTQHSTLVIHKRYHTGQRPYQCNFCNKSFVSRALLNAHGKVHLVNVVNVIVQPTYSRTRNDEDSPTTMLTKLDLVRKVPNAVATRSKKSPTTTTTTTKTPKTTKTTKKTTTVTTSPKKTDKSMLETLLSDGKTIDDEIKQESVDIDEDDHPLAYNCKLCGIFFASEELMDDHEIENHKGKRKNTCNQCGRVFRTIINLRKHMKKHVGRKRKTTTGNSAGRTNIVKEKKEKYETEYMCDTCHKIFHHKSNYQKHLLRHTTGELTCKHCPKKFRLFRDLTRHEKTHFYPSYVCKECDYETTVLAALSIHMTRHTDKSDLPFKCNDCDKRFRKAIDLQEHYNVHSGEKPFVCQNCGSSFYLRRQLSAHCRRSHPEIKANKITSTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSSEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCKICSRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -